Thursday, October 03, 2024

CDC Statement On California H5 Cases (n=2)

 

#18,336


The CDC has published a brief statement on the two California H5 cases reported earlier today.  Testing is underway to determine the full subtype, but it is highly likely to match the H5N1 virus known to be circulating in Dairy cattle. 



CDC Confirms New Human Cases of H5 Bird Flu in California

STATEMENT
For immediate release: October 3, 2024
CDC Media Relations
(404) 639-3286
media@cdc.gov
https://www.cdc.gov/media/


October 3, 2024 - CDC has confirmed two human cases of H5 bird flu from specimens submitted by California. The cases occurred in people with occupational exposure to infected dairy cows. An investigation led by California is ongoing. The identification of H5 in people with exposure to infected animals is not unexpected and does not change CDC's risk assessment for the general public, which continues to be low.
At this time, there is no known link or contact between the first and second confirmed cases in California, suggesting these are separate instances of animal-to-human spread of the virus. CDC continues to collaborate closely with California and other state public health officials to support state-run efforts to control the spread of H5N1 from infected animals to humans; California's active monitoring highlights the steps being taken at the state level to lower the risk to farm workers who may be in contact with animals with H5N1.In the coming days, CDC will conduct additional characterization of the viruses, including sequencing, isolating and growing the viruses, if possible.

These are the first human cases of H5 in California, where H5N1 outbreaks among dairy herds were first reported in August 2024. H5N1 bird flu was detected for the first time in cows this year in the United States. The virus is widespread in wild birds and has caused ongoing outbreaks among poultry in the United States since 2022. It has caused rare, sporadic infections in people who work with infected animals, such as dairy cow workers and poultry workers. Including this most recent case, 16 human cases of H5 have been reported in the United States during 2024, bringing the total to 17 cases since 2022. Cases during 2024 have been reported in Texas (1), Michigan (2), Colorado (10), Missouri (1) and California (2). Six of the 16 reported human cases have been linked to exposure to sick or infected dairy cows. Nine cases had exposure to infected poultry.
The source of infection for the one case in Missouri has not been determined. Serologic testing of contacts of the case in Missouri is ongoing. CDC has recommendations to protect people against H5N1 bird flu in dairy cattle. These include avoiding contact with wild birds and sick or dead animals and not preparing or eating unpasteurized (raw) milk or raw cheese. If you work with dairy cows or other animals that could be infected with H5N1 bird flu, wear personal protective equipment (PPE) when in contact with (or around) dairy cows, raw milk, other animals, or surfaces and other items that might be contaminated with virus. CDC recently issued updated personal protective equipment guidance (PPE) to prevent H5N1 bird flu infection.

CDC recommends that if you get sick after close contact with infected animals, contact your local health department and a health care provider for testing. Symptoms of H5 include eye redness (conjunctivitis), mild flu-like upper respiratory symptoms, fever, cough, sore throat, difficulty breathing, runny or stuffy nose, and muscle aches.

California Public Health Now Confirming Two (Unrelated) H5N1 Cases

#18,335

Four hours ago California's Department of Public Health announced a single suspected H5N1 infection in a dairy worker, but in the past few minutes they have announced - via email - two confirmed cases.

They report: There is no known link or contact between the two cases, suggesting only animal-to-human spread of the virus in California.

As of this posting, there is no link on the CDPH website for this report.  I'll amend this post when that link becomes available.  


FOR IMMEDIATE RELEASE

October 3, 2024

NR24-029

CONTACT: media@cdph.ca.gov


SACRAMENTO – The California Department of Public Health (CDPH) reports that the human case previously under investigation for bird flu, and one additional case, have been confirmed H5 bird flu by CDC. These are the first human cases of bird flu identified in the state and are both in Central Valley individuals who had contact with infected dairy cattle.


There is no known link or contact between the two cases, suggesting only animal-to-human spread of the virus in California. Like the first case, the second individual has also experienced mild symptoms, including conjunctivitis (eye symptoms), and neither reported respiratory symptoms, nor was hospitalized. To protect patient privacy, additional details will not be provided at this time.


Risk Remains Low: The risk to the general public remains low, but people who interact with infected animals, like dairy or poultry farm workers, are at higher risk of getting bird flu. CDPH recommends that personal protective equipment, or PPE, such as respirators (N95 masks), eye protection (face shields or safety goggles), and gloves be worn by anyone working with animals or materials that are infected or potentially infected with the bird flu virus. Wearing PPE helps prevent infection. Please see CDPH’s Worker Protection from Bird Flu for full PPE guidance.


Pasteurized milk and dairy products continue to be safe to consume, as pasteurization is fully effective at inactivating the bird flu virus. As an added precaution, and according to longstanding state and federal requirements, milk from sick cows is not permitted in the public milk supply.


What CDPH is Doing: CDPH has helped coordinate and support outreach to dairy producers and farm workers on preventive measures that have helped keep human cases low in other states with bird flu outbreaks. CDPH continues to support local health departments in distributing PPE from state and federal stockpiles directly to affected dairy farms, farmworker organizations, poultry farm workers, those who handle raw dairy products, and slaughterhouse workers. To protect California farm workers from bird flu, during the last four months CDPH has distributed more than 340,000 respirators, 1.3 million gloves, 160,000 goggles and face shields, and 168,000 bouffant caps.


In addition, CDPH is working closely with local public health laboratories and local health departments to provide health checks for exposed individuals and ensure testing and treatment are available when needed. As one of the 14 states with infected dairy herds, California also received 5,000 additional doses of seasonal flu vaccine for farm workers from the CDC. CDPH is working to distribute the doses to local health departments with the highest number of dairy farms.


CDPH has been tracking bird flu and making preparations for a possible human infection since the state’s first detection in poultry in 2022. CDPH partners closely with the California Department of Food & Agriculture (CDFA) on a broad approach to protect human and animal health. CDPH and the CDC use both human and wastewater surveillance tools to detect and monitor for bird flu, and work closely with local health departments to prepare, prevent, and lessen its impact on human health.


What Californians Can Do: People exposed to infected animals should monitor for the following symptoms for 10 days after their last exposure: eye redness (conjunctivitis), cough, sore throat, runny or stuffy nose, diarrhea, vomiting, muscle or body aches, headaches, fatigue, trouble breathing, and fever. If they start to feel sick, they should immediately isolate, notify their local public health department, and work with public health and health care providers to get timely testing and treatment.


CDPH recommends that all Californians — especially workers at risk for exposure to bird flu — receive a seasonal flu vaccine. Although the seasonal flu vaccine will not protect against bird flu, it can decrease the risk of being infected with both viruses at the same time and reduce the chance of severe illness from seasonal flu.


For the latest information on the national bird flu response, see the CDC’s Bird Flu Response Update.

California: CDPH Investigating A Suspected Human H5N1 Infection

 


#18,334


California's Department of Public Health has announced via email their investigation into a `presumptive positive' H5N1 infection in a dairy worker in the Central Valley region.  As we've seen with other infected dairy workers, this individual's illness is described as `mild' consisting only of conjunctivitis (eye redness).

The patient is being treated with antiviral medications and remains at home. Confirmatory tests are being conducted by the CDC, and we typically get those results in 24 hours or so.

Earlier today we saw the number of HPAI H5 infected herds in California rise to 54, and it would not be surprising to see that number go higher.  The text from the emailed statement follow:

Individual had contact with infected dairy cattle;

risk to general public remains low

 

What You Need To Know: One possible human case of bird flu is being investigated in an individual who had contact with infected dairy cattle in the Central Valley. The individual had mild symptoms. The risk to the general public remains low, although people who interact with infected animals are at higher risk of getting bird flu. 

 

SACRAMENTO – The California Department of Public Health (CDPH), in coordination with local health partners and the Centers for Disease Control and Prevention (CDC), is investigating a possible human case of H5N1 bird flu in an individual who had contact with infected dairy cattle in the Central Valley.


"Ongoing health checks of individuals who interact with potentially infected animals helped us quickly detect and respond to this possible human case. Fortunately, as we’ve seen in other states with human infections, the individual has experienced mild symptoms,” said Dr. Tomás J. Aragón, CDPH Director and State Public Health Officer. “We want to emphasize that the risk to the general public is low, and people who interact with potentially infected animals should take prevention measures. CDPH continues to support local health departments and farms with prevention recommendations, health checks and guidance on proper notification, testing and treatment."


Risk Remains Low: The risk to the general public remains low, but people who interact with infected animals, like dairy or poultry farm workers, are at higher risk of getting bird flu. CDPH recommends that personal protective equipment, or PPE, such as respirators (N95 masks), eye protection (face shields or safety goggles), and gloves be worn by anyone working with animals or materials that are infected or potentially infected with the bird flu virus. Wearing PPE helps prevent infection. Please see CDPH’s Worker Protection from Bird Flu for full PPE guidance.


Pasteurized milk and dairy products continue to be safe to consume, as pasteurization is fully effective at inactivating the bird flu virus. As an added precaution, and according to longstanding state and federal requirements, milk from sick cows is not permitted in the public milk supply.


About The Case: The individual is a worker at a Central Valley dairy facility experiencing an outbreak of bird flu among dairy cattle. The individual experienced mild symptoms, reporting only conjunctivitis (eye redness). Once the local health department was notified, their public health laboratory tested the individual for H5N1, and CDPH was notified of a “presumptive positive” result. Specimens have been forwarded to the CDC for confirmatory testing. In accordance with CDC guidance, the individual is being treated with antiviral medication and is staying home. To protect patient privacy, additional details will not be provided.


What CDPH Is Doing: CDPH has helped coordinate and support outreach to dairy producers and farm workers on preventive measures that have helped keep human cases low in other states with bird flu outbreaks. CDPH continues to support local health departments in distributing PPE from state and federal stockpiles directly to affected dairy farms, farmworker organizations, poultry farm workers, those who handle raw dairy products, and slaughterhouse workers. To protect California farm workers from bird flu, during the last four months CDPH has distributed more than 340,000 respirators, 1.3 million gloves, 160,000 goggles and face shields, and 168,000 bouffant caps.


In addition, CDPH is working closely with local public health laboratories and local health departments to provide health checks for exposed individuals and ensure testing and treatment are available when needed. As one of the 14 states with infected dairy herds, California also received 5,000 additional doses of seasonal flu vaccine for farm workers from the CDC. CDPH is working to distribute the doses to local health departments with the highest number of dairy farms.


CDPH has been tracking bird flu and making preparations for a possible human infection since the state’s first detection in poultry in 2022. CDPH partners closely with the California Department of Food & Agriculture (CDFA) on a broad approach to protect human and animal health. CDPH and the CDC use both human and wastewater surveillance tools to detect and monitor for bird flu, and work closely with local health departments to prepare, prevent, and lessen its impact on human health.


What Californians Can Do: People exposed to infected animals should monitor for the following symptoms for 10 days after their last exposure: eye redness (conjunctivitis), cough, sore throat, runny or stuffy nose, diarrhea, vomiting, muscle or body aches, headaches, fatigue, trouble breathing, and fever. If they start to feel sick, they should immediately isolate, notify their local public health department, and work with public health and health care providers to get timely testing and treatment.


CDPH recommends that all Californians — especially workers at risk for exposure to bird flu — receive a seasonal flu vaccine. Although the seasonal flu vaccine will not protect against bird flu, it can decrease the risk of being infected with both viruses at the same time and reduce the chance of severe illness from seasonal flu.


For the latest information on the national bird flu response, see the CDC’s Bird Flu Response Update.

USDA: California Now Reporting 54 Dairy Herds Infected With HPAI H5N1

 

#18,333

Just over a month ago, California - which had previously believed they had no infected dairy herds - announced the discovery of 3 infected herds.  Since then they've reported a steady rise in HPAI H5 infected herds, reaching 34 herds by early last week

While the last update on the CFDA website lists 44 dairies infected (as of Oct 1st), today the USDA has announced at least 10 more infected herds (n=54).


The most recent additions (n=11).


California has well over 1,000 dairy herds, but testing remains limited, apparently reserved for dairies with direct connections to known infected farms and/or in close proximity to infected premises.  

With the exception of Colorado, states have been unwilling to aggressively pursue mandatory testing of cattle or of bulk milk tanks. As a result, we have no idea how widespread this virus really is in American cattle.

Assurances that the `milk supply is safe due to pasteurization' - while largely true - ignores the legal sale of raw milk in many of theses states (including California), and the very real problem that infected cows have been transmitting this virus to other hosts (including cats, rodents, and even humans), where it may evolve further.

Admittedly, our current strategy of `don't test, and don't tell' - while fervently hoping the virus goes away - may end up working. But it relies heavily on our getting extremely lucky with this HPAI virus.  

And looking back over the past 5 years, our luck with emerging viruses hasn't been running that good. 

ECDC/EFSA Quarterly Avian Influenza Overview Jun 2024 - Sept 2024

Human cases of A(H5N1) virus infection by year of onset and reporting country, 2003–2024

#18,332

The ECDC publishes a highly detailed avian influenza surveillance report roughly every 3 months, and while they tend to be EU centric, in its 60+ pages you'll find ample coverage of outbreaks and infections from around the world.

The graphic above illustrates that between 2016 and 2021 we saw a steep decline in human infections with HPAI H5N1 around the globe.  Much of this was due to the dominance of an  H5N8 subtype between 2014 and 2019.  
 
Avian influenza hadn't gone away, of course, as not shown are > 1,500 H7N9 cases in China (2013-2018), and infections with a smattering of other subtypes (H5N6, H9N2, H7N2, H10Nx, etc.). It is also likely that due to limited surveillance and sharing of data, some cases were simply never detected and/or reported.

In 2021, following a complex series of genetic changes to the H5N1 virus, we began to see a global surge and spread of H5N1, characterized by increased spillovers into mammals (mink, foxes, marine mammals, and eventually even cattle). 

Human cases has risen as well (see chart below), although again, these numbers may not represent the true burden of these infections. 


There have been some encouraging trends, including a substantial drop in outbreaks in wild birds and poultry in Europe over the past year.  Additionally, they report no new HPAI virus detections in mammals reported in Europe between 15 June and 23 September 2024.

Whether, and how long, these trends last remains to be seen, as we've seen quite a different situation unfolding in North America. 

These quarterly reports make excellent reference material, well worth perusing.  I've posted the ECDC summary and link below.



Surveillance and monitoring
3 Oct 2024

Publication series: Avian influenza overview

Between 15 June and 20 September 2024, 75 highly pathogenic avian influenza (HPAI) A(H5) and A(H7) virus detections were reported in domestic (16) and wild (59) birds across 11 countries in Europe.
Although the overall number of detections in Europe continued to be low compared to previous epidemiological years, an increase in cases along the Atlantic, North Sea and Baltic coasts was notable, particularly an increase in the detection of HPAI viruses in colony-breeding seabirds. Besides EA-2022-BB and other circulating genotypes, these detections also included EA-2023-DT, a new genotype that may transmit more efficiently among gulls.
In Germany, HPAI A(H7N5) virus emerged in a poultry establishment near the border with the Netherlands. No new HPAI virus detections in mammals were reported in Europe during this period, but the number of reportedly affected dairy cattle establishments in the United States of America (USA) rose to > 230 in 14 states, and HPAI virus was identified in three new mammal species.
Between 21 June and 20 September 2024, 19 new human cases with avian influenza virus infection were reported from the USA (six A(H5N1) cases and five A(H5) cases), Cambodia (five A(H5N1) cases, including one fatal), China (one fatal A(H5N6) case and one A(H9N2) case), and Ghana (one A(H9N2) case). Most of the human cases (90%, n = 17/19) had reported exposure to poultry, live poultry markets, or dairy cattle prior to avian influenza virus detection or onset of illness.
Human infections with avian influenza viruses remain rare and no evidence of human-to-human transmission has been documented in the reporting period. The risk of infection with currently circulating avian A(H5) influenza viruses of clade 2.3.4.4b in Europe remains low for the general public in the European Union/European Economic Area (EU/EEA). The risk of infection remains low-to-moderate for those occupationally or otherwise exposed to infected animals or contaminated environments.

 

Thumbnail



Wednesday, October 02, 2024

WHO DON: Middle East respiratory syndrome coronavirus - Kingdom of Saudi Arabia

 

#18,331

Long before the SARS-CoV-2 virus emerged in China in 2019, we were watching another emerging coronavirus on the Arabian peninsula - MERS-CoV - which is endemic in camels and has, since 2012, spilled over over into humans numerous times, often with deadly effect. 

While not nearly as transmissible as SARS-CoV-2, MERS-CoV appears to be much deadlier than COVID (35% CFR among known cases), although surveillance and reporting has been limited. 

In 2017 we saw a study (see A Pandemic Risk Assessment Of MERS-CoV In Saudi Arabia) suggesting the virus didn't have all that far to evolve before it could pose a genuine global threat. 

Since COVID emerged, reporting of MERS cases by Middle Eastern nations - which has often left a lot to be desired - has plummeted (see WHO EMRO Chart above).

Although we've not any large outbreaks in several years, last May we saw a report on three cases epidemiologically linked to exposures in a health-care facility in Riyadh, illustrating that under the right conditions the virus does spread from human-to-human.

Today the WHO is reporting on KSA's 5th case of 2024, which involves a 50-something male (with no known camel contact)  who fell ill, briefly entered a Saudi hospital (where respiratory samples were taken), and then checked himself out and traveled to Pakistan before test results could be returned. 

A close contact similarly traveled abroad right after exposure. It appears in both cases, based on investigations to date, that no additional transmission of the virus occurred.  

Long-time readers will recall that in 2015, a single infected traveler to South Korea sparked a massive outbreak, which infected 185 people across 16 hospitals, and claimed 38 lives (see Superspreaders & The Korean MERS Epidemiological Report)

While the number of MERS-CoV cases reported over the past few years has fallen sharply, the virus continues to evolve (see Preprint: Ongoing Evolution of Middle East Respiratory Syndrome Coronavirus, Kingdom of Saudi Arabia, 2023-2024), and continued vigilance is required. 

I've posted the link, and some excerpts, from today's WHO report.  Follow the link to read it in its entirety. 

Middle East respiratory syndrome coronavirus - Kingdom of Saudi Arabia
2 October 2024

Situation at a glance

The World Health Organization (WHO) was notified of one human case of Middle East respiratory syndrome coronavirus (MERS-CoV) on 5 September 2024, by the Ministry of Health of the Kingdom of Saudi Arabia (KSA). The case is a male from the Eastern Region of KSA aged between 50-55 years, with underlying health conditions. He had no history of contact with camels and was not a health care worker. The follow-up of close contacts has been completed, and no secondary cases have been detected. Since the beginning of the year, five cases including four deaths have been reported from KSA. The notification of this case does not change WHO’s overall risk assessment, which remains moderate at both the global and regional levels.

Description of the situation

On 5 September 2024, the Ministry of Health (MoH) of the Kingdom of Saudi Arabia (KSA) notified the World Health Organization (WHO) of one case of Middle East respiratory syndrome coronavirus (MERS-CoV).

The case, a man aged between 50-55 years residing in the Eastern Region of KSA, developed a fever, cough, shortness of breath, and palpitations on 28 August 2024. He was admitted as a cardiac case to a local hospital on 31 August and transferred to a medical complex on 1 September. From there he was discharged at his request the same day, against medical advice.
 
A nasopharyngeal swab taken on 1 September and tested at the National Public Health Laboratory as part of severe acute respiratory illness (SARI) sentinel surveillance, returned a positive result for MERS-CoV on 4 September through Real-Time Polymerase Chain Reaction (RT-PCR).

After the patient was discharged from the hospital and prior to receiving the laboratory results confirming MERS-CoV, he traveled to Pakistan on 2 September.

The patient is a non-healthcare worker with several co-morbidities. Following field investigation, there was no evidence of interaction with camels. In KSA, follow-up has been completed for one household member, 23 healthcare professionals, and two patients who had contact with the case, with no secondary cases reported. Among close contacts listed in KSA, one travelled from Saudi Arabia to South Asia on 4 September. Flight details and personal information were retrieved to initiate contact tracing and follow-up, and no secondary cases have been identified in connection with this high-risk contact.

Following the notification on 5 September 2024 from the International Health Regulations (IHR) National Focal Point (NFP) of KSA to the Pakistan IHR NFP regarding the patient’s travel and positive MERS-CoV results, the patient was located in Pakistan, and the health authorities proceeded to transfer the patient to a public hospital for strict isolation and management of existing comorbidities.

A total of 41 nasopharyngeal samples, including repeat samples of the case and close contacts were collected and tested at the Pakistan National Institute for Health/National Reference Laboratory. The patient tested positive, albeit with a low viral load, while all contacts tested negative. Close contacts, including family members and healthcare workers were closely monitored for 14 days, and no secondary cases have been identified.

The patient was discharged on 13 September after receiving a negative test result for MERS-CoV, along with instructions to continue oral medication and to return for a follow-up appointment in five days. This follow-up was successfully completed on 19 September, confirming the patient's full recovery.

Since the beginning of the year, a total of five cases including four deaths have been reported from KSA, and this is the first case reported since the last Disease Outbreak News was published on 8 May 2024.
 
(SNIP)

WHO risk assessment

Since the first report of MERS-CoV in the Kingdom of Saudi Arabia (KSA) in 2012 until now, human infections have been reported in 27 countries, spanning all six WHO regions. The majority of MERS-CoV cases (2205; 84%), have been reported in KSA, including this newly reported case.

The notification of this case does not change the overall risk assessment. The new case reported is believed to have acquired MERS-CoV infection locally within KSA. However, the potential for international transmission is increased due to the fact that the individual visited Pakistan, while a high-risk contact traveled to South Asia within the 14-day follow-up period. Both individuals had arranged their travels prior to the occurrence of the event and before the test results of the case were obtained and disseminated.

WHO expects that additional cases of MERS-CoV infection will be reported from the Middle East and/or other countries where MERS-CoV is circulating in dromedaries. In addition, cases will continue to be exported to other countries by individuals who were exposed to the virus through contact with dromedaries or their products (for example, consumption of raw camel milk), or in a health-care setting. Human-to-human transmission of MERS-CoV may occur if there are delays in identifying the infection, particularly in countries that are not well-acquainted with the disease, as well as slow triage of suspected cases and delays in the implementation of standard infection prevention and control measures.
 
WHO continues to monitor the epidemiological situation and conducts risk assessments based on the latest available information.

         (Continue . . . )