Showing posts with label Flublogia. Show all posts
Showing posts with label Flublogia. Show all posts

Saturday, December 13, 2014

Riding the Bird Flu Rollercoaster

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The H5N1 Roller Coaster

 

# 9435

 

Although it is still early in our winter `bird flu season’, the early indicators suggest a busy few months ahead, with H7N9 expected to return to China, H5N1 rising again in Egypt, and prospects for seeing outbreaks in Vietnam, Cambodia, Indonesia, and other bird flu endemic regions.


Avian influenza reports generally begin to climb in November – peak in March or April – and usually decline by May or early June. 

 

Until a couple of years ago, we really only had one bird flu virus to worry about; H5N1.  In 2013 it was joined by a worthy competitor – a newly emerged H7N9 virus.  Last year, we added several new reassortant viruses to our watch list, including the H10N8 virus, H5N6, and H5N8 (in poultry). 

 

It is not inconceivable that additional viruses will emerge in the coming months, or that one of the upstart viruses from last year will gain traction, but for now  H7N9 and H5N1 are two avian flu viruses of greatest concern.


As bird flu season corresponds to seasonal `cold & flu’ season, we tend to see a lot of `suspect’ cases (in endemic countries) tested – but most will end up having something less exotic – such as influenza, pneumonia, or even dengue or malaria

 

Viral diseases almost all start out with similar symptoms, and so we see a lot of `false alarms’.  This year with enhanced surveillance around the world for MERS, Ebola, and avian flu – we are apt to see more suspect cases than usual.

 

Right now in Egypt, there are probably a half dozen reports each day of suspected H5N1 infections, but over the last month only a dozen have been announced as being positive for the virus.  A few years ago it was announced that Egypt had tested more than 10,000 `suspect cases’, and of those fewer than 100 were positive for the virus.

 

Which is why I don’t tend to blog `suspect’ cases.  Unless there is something unusual about a report, I wait for something more solid to report.   Otherwise I’m constantly having to post ` X tested negative’  follow up reports.

 

You can, however, keep  track of cases being tested by checking in with FluTrackers, where their newshounds do a terrific job of monitoring press reports from around the world.

Click the   link to see their most recent reports.

 

You’ll find similar reporting by the newshounds on The Flu Wiki,  and of course Crof over at Crofsblog does a phenomenal job tracking multiple news threads.   For scientific analysis – and the latest charts on avian flu, Ebola, and MERS – you’ll want to visit Dr. Ian Mackay’s VDU blog as well.


You’ll find links to additional sources of information in my sidebar.

 

Since many official sources – such as Ministries of Health or Agriculture – are slow (or sometimes simply reluctant) to post updates, we find ourselves relying on media sources for information.  While they can often yield valuable information, they can also be hyperbolic (and sometimes wildly inaccurate) in their reporting.   


Add in the ambiguities of syntax-challenged machine translations of the original Arabic or Chinese text, and Caveat lector becomes the order of the day.


While a lot of my readers have taken this rollercoaster ride before, and already know what to expect, I know a lot of visitors haven’t.  Things may get hectic – particularly in the first quarter of next  year.  We may be following multiple outbreaks – in multiple countries – of multiple disease threats.


This year, in addition to several flavors of avian flu to keep track of, we’ve got a `drifted H3N2 seasonal flu’, a likely return of MERS in the Middle East, and Ebola still burning away in West Africa.  


While these reports may be coming in fast and furious, from a global health perspective, the important thing is how these diseases are spreading.  As long as avian flu or MERS isn’t spreading efficiently from human-to-human, its impact – no matter how dramatic or insistent the media coverage – is likely to be low.


And while we keep track of individual case counts, we also know they only represent some portion of the cases out there.  Even in developed nations, the number of people reported to have been infected by a disease is almost always an undercount.  

surveillance

In countries where surveillance, testing, and reporting are limited, the case counts only serve as a rough guide as to the size of any outbreak.


In short, one shouldn’t get too hung  up over the exact numbers.  Whatever has been reported is invariably wrong.  As is often heard in Flublogia – whatever the official count – you can `probably add a zero to it’.

 

While it is difficult to forecast what kind of winter season we are apt to see, I admit I keep hearing Bette Davis’s famous quote (as Margo Channing in All About Eve)  in my head.

“Fasten your seatbelts. It’s going to be a bumpy night.”

Friday, February 21, 2014

H7N9 Moves North, Guangdong Reports New Cases

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Dr. Ian Mackay’s latest H7N9 Hotspot Map adds Jilin province

 

# 8320

 

Dr. Ian Mackay has already blogged the story, and updated his map this morning, on the most northern report of H7N9 to date in China – that of a 50 year-old male poultry farmer from Jilin  Province who is reportedly isolated and in stable condition. 

 

It is worth noting that Jilin province lies adjacent to North Korea, a closed society that rarely reports on any public health situations.

 

While there are a number of media reports on this case (see FluTrackers thread here), thus far I’ve not found any official statement from the Jilin Provincial authorities. The following (machine translated) report comes from Xinhua News.

 

Jilin confirmed its first case of human infection with the H7N9 avian flu

At 20:04 on February 21, 2014
Source:
Legal Network

0 People involved 0 Comment

Xinhua Changchun February 21 (Reporter Yao Youming) 21, the Jilin Provincial Government Information Office announced that the H7N9 bird flu found in Changchun City's first confirmed case of human infection, which is also confirmed cases of H7N9 bird flu first case of human infection in Jilin .

It is understood that the patient was a 50-year-old man surnamed Liang, currently residing in net Development Zone in Changchun, poultry farming, currently implemented in the hospital for isolation and treatment, the condition is more stable. After investigation of the epidemiological investigation of close contacts of patients have been implemented under medical observation, did not reveal any abnormalities.

Jilin Provincial Government Information Office official microblogging "Jilin release," said the Changchun City CDC received reports of 19 May, the First Hospital of Jilin University, admitted to a pneumonia patient with history of exposure to dead poultry. Changchun City CDC immediately organize relevant personnel to carry out epidemiological surveys and collect patient specimens for testing, the results of human infection of H7N9 avian influenza virus positive by the Jilin Provincial CDC complex, the results are positive. 21 am Chinese CDC review the results as positive feedback.

Jilin Provincial Government has launched the emergency response. Changchun City is fully deployed to implement the emergency response and control measures.

 


Additionally, Shiloh on FluTrackers has picked up the report of three more H7N9 cases from Guangdong province.

 

Guangdong Province reported three new cases of human infection with H7N9 bird flu virus


2014-02-21 14:01:48 / Ministry of Health and Family Planning Commission

Health and Family Planning Commission of Guangdong Province on February 21 briefing, Guangzhou, Zhaoqing, Jiangmen City 3 3 new cases of human infection of H7N9 avian influenza confirmed cases.

The first case is a female, 46 years old, currently residing in Zhaoqing Sihui. Confirmed on February 19, currently treated in a hospital.

The second case is a male, 64 years old, currently residing in Haizhu District of Guangzhou. Died on February 18. Retrospectively confirmed on February 19.

The third case is a male, 69 years old, currently residing in Jiangmen, Kaiping City. Confirmed on February 20, currently treated at a local hospital.

An earlier Shenzhen case, confirmed on January 30, one in Tangmou and one in Zhaoqing City, confirmed on February 7, recovered.

 

Sharon Sanders on Flutrackers has already added these four cases to her terrific H7N9 Case Line List, without which I’d never be able to keep these cases straight.

#362 - Woman, 46, Zhaoqing Sihui. Confirmed on February 19, currently treated in a hospital. Guangdong province


#363 - Man, 64, Haizhu District of Guangzhou. Died on February 18. Retrospectively confirmed on February 19. Guangdong province Death


#364 - Man, 69, Jiangmen, Kaiping City. Confirmed on February 20, currently treated at a local hospital. Guangdong province


#365 - Man, 50, engaged in poultry farming. Currently treated in isolation at hospital, in stable condition, hospitalized on Feb 19, confirmed on Feb 21. Jilin Province
 

 

One of the remarkable things about this ad hoc collective we call Flublogia is that there is almost always a volunteer on watch somewhere in the world, 24 hours a day.  While I’m sleeping I know that Crof on the West Coast of Canada is up, and blogging, and that 16 time zones ahead of me, Dr. Ian Mackay is keeping a watchful eye from Australia.

 

Similarly, newshounds like Ironorehopper  and Tetano in Italy,  Gert van der Hoek in The Netherlands, Biological in Ireland (and others, too numerous to mention) are on watch around the globe, posting their finds on FluTrackers and the Flu Wiki (for more on this, see Newshounds: They Cover The Pandemic Front).

 

Lest anyone think that this blog is a solitary endeavor, much of what appears here on AFD would be impossible were it not for their hard work and generous support.

Saturday, April 13, 2013

Keeping Track Of The H7N9 Outbreak

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ECDC Map

 

 

# 7129

 

With the confirmed case count nearing 50, and those numbers in all likelihood to rise, keeping track of individual cases, and outcomes, has become a demanding, and at times, frustrating job.

 

Gleaning data from press releases and news stories (which can vary in the type, and reliability, of data), flublogians around the world are trying various means to keep information straight and organized.  

 

Aiding flu-literate journalists like Helen Branswell, Maggie Fox, Jason Gale, and Dr. Richard Besser and bloggers like Crof and Maryn McKenna, and myself, there’s a small army of (mostly volunteer) analysts crunching numbers and making charts available online.

 

Dr. Ian M. Mackay from the University of Queensland in Australia maintains the  Virology Down Under website and blog, where he is keeps tabs of mew cases and analyzes the data  (link).

 

As you can see by his terrific chart below, the dataset is beginning to get crowded.  But the trend in onset dates revealed by this graphic provides a much better sense of how this outbreak is progressing. You’ll find more than just charts on the VDU H7N9 website, and so it is worth visiting every day.

 

Timeline-H7N9-WEEKS


Similarly, the newshounds on FluTrackers are continually scouring the Internet for new case reports, which Sharon Sanders uses to update their running list of confirmed and suspected cases.

 

 

2013 Human Case List for Confirmed and Suspected H7N9 Type Influenza*


#1 - Man, 87, onset date February 19, died March 4 - Shanghai Death+
#2 - Man, 27, onset date February 19, died March 10 - possible pork contact - Shanghai Death
#3 - Woman, 35, onset date March 15, hospitalized in critical condition - possible poultry contact - Chuzhou City, Anhui Province Death++
#4 - Woman, 45, onset date March 19, hospitalized March 27 - poultry culler - Jiangning district of Nanjing, Jiangsu province
#5 - Woman, 48, onset date March 19, hospitalized March 30 - Shuyang county of Suqian City, Jiangsu province
#6 - Man, 83, onset date March 20 - hospitalized March 29 - Wujiang district of Suzhou, Jiangsu province Death
#7 - Woman, 32, onset date March 21 - hospitalized March 28 - Binhu district of Wuxi City, Jiangsu province
#8 - Man, 38, onset date March 7, hospitalized March 18, died March 27 - reported to be a cook - Taicang, Zhejiang province Death
#9 - Man, 67, onset date March 25, hospitalized March 25, died April 2? Hangzhou, Zhejiang province
#10 - Man, 64, onset date hospitalized March 29, Zhejiang province Death
#11 - Man, 48, onset date March 28, engaged in chickens and ducks transportation work - Shanghai Death
#12 - Woman, 67, onset date March 22, hospitalized on March 25 in critical condition - Shanghai
#13 - Woman, 52, onset date March 27, died on April 3 - Shanghai Death
#14 - Child, 4, onset date March 31, mild case. Shanghai
#15 - Woman, 61, onset date March 20, from a retirement home - in critical condition Qinhuai District, Nanjing, Jiangsu province
#16 - Man, 79, onset date March 21, from a retirement home. Qinhuai District in Nanjing, Jiangsu province, in critical condition
#17 - Man, 74, onset date March 28, hospitalized March 3, farmer, died April 11 Shanghai Death note
#18 - Man, 66, onset date March 29, hospitalized April 2, in treatment - from a retirement home, Shanghai
#19 - Man, 59, onset on March 25, hospitalized on March 30 Shanghai
#20 - Man, 67 - onset on March 29. Hospitalized on March 30 - in treatment - Shanghai
#21 - Man, 55, onset date March 28, hospitalized April 1 in stable condition - poultry worker - Anhui province
#22 - Age 64, onset date: April 1. Hospitalized on April 7. - Shanghai Death
#23 - Man, 85, onset date March 28, hospitalized April 8 in critical condition, retirement home, Nanjing Shimonosek Jiangsu province
#24 - Woman, 25, pregnant, onset date: March 30. - In critical condition. Zhenjiang City area, Jiangsu province
#25 - Woman, 51, onset date March 13, hospitalized, Huzhou City, Zhejiang Province
#26 - Man, 79, onset date March 29, hospitalized in critical condition, Hangzhou, Zhejiang Province
#27 - Man, 62, onset date April 1, hospitalized April 5, retired Shanghai
#28 - Man, 77, onset date April 3, hospitalized April 7, retired Shanghai
#29 - Man, 65, hospitalized - a farmer Hangzhou, Zhejiang Province
#30 - Man, 70, onset date March 29, Wuxi Huishan, Jiangsu province
#31 - Man, 74, onset date April 2, Jiangyin City, Wuxi City, Jiangsu province
#32 - Woman, 76, onset date April 1, hospitalized April 5, Shanghai
#33 - Woman, 81, hospitalized April 4, farmer , Shanghai
#34 - Man, 31, chef, Yangzhou City, Jiangsu province
#35 - Man, 56, teacher, Suzhou Industrial Park, Jiangsu province
#36 - Man, 74, onset date March 31, hospitalized April 5, died April 11 retiree, Shanghai Death
#37 - Woman, 83, onset date April 2, hospitalized April 7, Shanghai
#38 - Man, 68, onset date April 4, hospitalized April 9, Shanghai
#39 - Man, 53, onset date April 3, hospitalized April 10, Shanghai
#40 - Man, 86, onset date April 3, hospitalized April 6, Shanghai
#41 - Man, 66, onset date April 8, hospitalized April 9, Hangzhou, Zhejiang province
#42 - Man, 74, onset date April 6, hospitalized April 11, Hangzhou, Zhejiang province
#43 - Woman, 54, onset date April 6, hospitalization April 12, Huzhou, Zhejiang province
#44 - Child, 7, hospitalized April 11 Shunyi District Beijing
#45 - Woman, 77, Nanjing former Baixia District, Jiangsu province
#46 - Man, 72, Changshu, Jiangsu province
#47 - Man, 56, onset date April 1, hospitalized April 4; his wife was confirmed positive on April 4, Shanghai
#48 - Man , 65, onset date April 3, hospitalized April 9. Zhejiang Province
#49 - Man , 38, onset date April 6, hospitalized April 11. Zhejiang Province

 

Laidback Al on FluTrackers also updates charts and maps on this outbreak on this thread.

 

Another graphical representation of cases, along with links to individual news reports, can be found on Healthmap’s H7N9 page.

 

image

 

And the ECDC continues to provide almost daily epidemiological updates (April 13th edition), including charts and maps, on this emerging virus.  Check the ECDC home page for new updates.

 

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image

 


There are dozens of newshounds on flu forums like FluTrackers and The Flu Wiki, scores of people on twitter, and likely hundreds working behinds the scenes at public health organizations like Hong Kong’s CHP, the World Health Organization, the CDC, China’s CDC, and the ECDC who make it their job to keep the numbers straight, and the information flowing.

 

Admittedly, given the non-stop internet news cycle, and the leapfrogging of updates, it can still be difficult to keep abreast of the latest case counts. 


But without the efforts and generosity of the people mentioned above, and many more like them, it would probably be impossible.

 

At some point, if this outbreak grows substantially, it may become impractical to keep track of each individual case.

 

Nevertheless , the work being done right now is invaluable to those of us trying to make sense of the situation. And so a tip of my hat, and a world of thanks, to all those who are pitching in to keep the information rolling.

Tuesday, April 02, 2013

Reuters Blogs Flublogia On Emerging H7N9

 

 

# 7055

 

Many readers are no doubt familiar with journalist, author, and film producer Peter Christian Hall, whose pandemic inspired book American Fever was published in 2012. 

 

In 2011, Peter interviewed Crof, Scott McPherson, Cottontop, and myself for an article on flu bloggers, and our reaction to the movie Contagion, for The Huffington Post (see Contagion Grips 'Flublogia').

 

Yesterday Peter contacted me in regards to a story he wanted to write for Reuters, and I suggested he might want to talk to Jason Anthony Tetro, coordinator of the Emerging Pathogens Research Centre in Ottawa, who knows a heck of a lot more about virology than I do. 


Peter ultimately interviewed Jason, Sharon Sanders at FluTrackers, and myself for his article, which can be read on the Great Debate Blog, at Reuters.

 

New bird flu strain creates fear and surveillance

By Peter Christian Hall

April 2, 2013

An emerging bird flu that is mysterious and deadly is haunting China. With four fresh H7N9 cases reported in Jiangsu Province and no indication as to how three Chinese adults caught the little-noted avian flu virus that killed two of them in March, the global medical community is hoping the new flu will calm down until China’s health system can determine how it spread.

(Continue . . . )

H7N9 And The `Fog Of Flu’

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Screenshot taken from http://www.chinacdc.cn/en/  as of 0600 hrs EDT 4/1/13

 

 

# 7049

 

For the newshounds of Flublogia, the past 48 hours have been very busy, as dozens of stories (of widely varying substance and believability) have emerged out of China regarding the H7N9 virus.

 

You’ll find multiple news threads being curated on the two major flu sites (FluTrackers  & Flu Wiki), each filled with machine translated reports from across Asia.

 

Some of these machine translated reports would suggest there are more cases – if not confirmed, at least under suspicion – in China. Additionally, there are `speculative pieces’ – like this one out of Taiwan – that suggest a wider spread of the virus.

 

But how much credence we should give these stories remains very much in doubt. 

 

Some of these reports are attributed to anonymous sources, or are based on next-to-impossible-to-verify messages circulating on Chinese social media sites, like Weibo.  That doesn’t make them false, just hard to corroborate.

 

Like everywhere else in the world, there are political and social agendas in China that can influence how, and what, gets reported online and in the newspapers. 

 

Making matters worse, we often are dealing with machine-translations - which while often quite interesting – lack nuance, and can be difficult to properly interpret. 

 

There is an inevitable `fog of flu’ at the start of almost every disease outbreak that we’ve witnessed over the years; details get confused, different theories are offered, rumors abound, and the narrative gradually changes over time.

 

So my tendency is to take all of these reports with a fairly large grain of salt, and refrain from posting them on AFD until I can get some (admittedly subjective) degree of comfort regarding their veracity and/or value.

 

The good news is, while I doubt they are telling us everything they know, Beijing has been (for them, anyway) unusually forthcoming regarding this outbreak.

 

Viral sequences were deposited at GISAID in a very timely manner, and the China’s CDC website  posted a pretty good Q&A on this virus on Sunday (see graphic at top of page).

 

Actions that would have taken months (if ever) to happen during the SARS outbreak a decade ago in China.

 

Small steps perhaps, but encouraging nonetheless.


The next few days (and possibly weeks) will tell us a lot about this emergent virus, and the threat it could pose. H7N9 may turn out to be little more than an interesting footnote in the varied history of bird flu, or it may become the next big thing.

 

Stay tuned.

Friday, February 22, 2013

A Friday News Round Up

 

 


# 6960

 

 

There has been a good deal of disease news this week, much of which I’ve been unable to get to. So to catch up, a brief roundup of reportage from around the web.

 

 

Crof has a report this morning that Another H5N1 patient dies in SW China , along with another story, Cambodia: More on the 7th H5N1 death.

 

You’ll also find on Crofsblog, an easy to follow Cambodia: H5N1 chronology to February 21.

 

 

From CIDRAP News, the tag team of Lisa Schnirring and Jim Wappes produced five stories yesterday, all well worth your attention:

 

CDC midseason check finds scant flu vaccine effect for seniors

Feds unveil new policies for 'dual-use' H5N1 research

WHO confirms 13th novel coronavirus case

WHO recommends new B strain for next season's flu vaccine

Cambodia reports another H5N1 death

 

The always terrific Maggie Fox wrote about the latest CDC estimate of flu vaccine effectiveness for NBC News.

 

CDC says flu vaccine barely worked in over-65s this year

 

As did the inimitable Helen Branswell of the Canadian Press.

 

 

Flu shot gave minimal help to seniors

February 22, 2013 - 4:15am By HELEN BRANSWELL The Canadian Press

 

 

And lastly, I’d be remiss if I didn’t give a hat tip to the hardworking newshounds on FluTrackers and the FLu Wiki, whose tireless efforts not only help me in my blogging endeavors, but also provide an ongoing chronicle of emerging disease events around the globe.

Tuesday, December 04, 2012

Looking For Zebras

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Google Search Screenshot

 

# 6761

 

 

Every day a small, dedicated group of volunteers around the world begin their day with a pot of coffee, an internet connection, and the goal of finding hints of `a zebra’ – an unusual or exotic disease outbreak – from hundreds of news sources around the globe.

 

You see the results of their work often in this blog, or on Crof's H5N1, and in the daily listings of `flu forums’ like FluTrackers and the Flu Wiki.  

 

Sure, Crof and I hunt for, find, and translate many of our own articles, but its a big internet and and even bigger world. So we often rely on the dozens of newshounds who spend countless hours scouring the internet, looking for tiny morsels of potentially important information. 

 

This is difficult, exacting, sometimes mind-numbing work.  Particularly when dealing with languages like Arabic or Chinese.

  

image

As you can see, just finding the articles that need to be translated is a major undertaking.

 

Once a likely article is found, newshounds use a variety of translation methods (including the linguistic prowess of native speakers) to turn Bahasan, or Arabic, Spanish, French, or Chinese into some semblance of English. Often, when we must rely on machine translations, we use more than one translation system, to try to get the most readable result.

 

Even then, it takes experience and knowledge of idioms and local customs to properly interpret these stories - skills that many of these newshounds have developed over these many months (and sometimes years) of volunteer work.

 

All the more remarkable, these newshounds are uncompensated for their time and effort.  They do it because they believe it is important.

 

You’ll see that Crof and I try to credit these volunteer newshounds whenever we use the fruits of their labor because recognition is pretty much the only reward (other than personal satisfaction) they get. 

 

An incomplete list of some of the more prolific newshounds would include:


Gert van der Hoek, Ronan Kelly, Giuseppe Michieli, Tetano, Shiloh, Diane Morin, Pathfinder, Missouri Watcher, Treyfish, Alert, Tonka, Laidback Al, Carol@SC, Sharon Sanders, Alaska Denise, Hawkeye, Arkanoid Legent, Catbird,  Commonground, Shannon, Mingus, mixin & AlohaOR.

 

There are many others, including some that work on other forums than FluTrackers and the Flu Wiki.  So my apologies to those who I failed to mention.

 

Last April, when a mysterious pneumonia swept a hospital in Jordan the newshounds at FluTrackers began a thread on the outbreak, and over the next 7 days made 90 posts, including scores of Arabic news article translations.

 

We now know that this incident was the first known outbreak of the novel coronavirus now garnering considerable attention in the Middle East. 

 

Most of the time, outbreaks like this turn out to be something far less exotic, like seasonal influenza, Dengue or Chikungunya.  But the truth is, most disease outbreaks – regardless of their cause – start out looking pretty much the same; a cluster of flu-like-illnesses or pneumonias.

 

So newshounds take all of these outbreaks seriously, accepting that most will turn out to be something other than zebras, but documenting them anyway.

 

Because, like the cluster of unexplained pneumonias last April, sometimes they make sense only in retrospect. 

 

Today we’ve a good example of an `odd’ news report posted by Gert van der Hoek on FluTrackers that may – or may not – become a bigger story in the days to come.

 

The thread is Brazil: unknown respiratory disease, and it contains a machine translated account of five patients being transferred to a larger hospital due to an unknown pneumonia.  According to the news report, another 14 people have similar symptoms.

 

Here is an excerpt from the news report:

 

02/12/2012
Respiratory syndrome patients are transferred from Bethlehem to Curuçá


From the newsroom  Para News Agency

The State Department of Public Health (Sespa) decided to transfer to Bethlehem five patients with clinical gentler, who were admitted to the Hospital Municipal Curuçá with symptoms of acute respiratory syndrome because as yet undefined.


The aim is to ensure better care of the sick, whose cases are still being investigated by the Epidemiological Monitoring of Sespa in conjunction with the 3rd Regional Center for Health in Castlebay, the Municipal Health Curuçá, Central Laboratory of the State (Lacen), Centre Skill Scientific Renato Chaves (CPC) and Instituto Evandro Chagas.


Patients transferred to the capital will be admitted to the Unit Diagnosis of Meningitis (UDM), the University Hospital João de Barros Barreto, under monitoring of infectious disease. In addition to these five people, 14 more showed symptoms of the disease since the beginning of the outbreak in Curuçá Municipal Hospital, where a 17-year-old died in the ICU of the Holy House, on the evening of Saturday, 01.

(Continue . . . )

 

Armed with this information, I did a quick search myself, and found several other news reports regarding this `outbreak’, which may be viral, bacterial, or possibly even the result of chemical or radioactive exposure.

 

A report, dated yesterday from the Diario do Para, states:

 

Sai result today on infection in hospital

Monday, 03/12/2012, 1:47 a.m.

The State Department of Health (SESPA) has no information about what the real focus of the contamination in Unit Joint Health Dr. Henrique Alves de Christo, located in the municipality of Curuçá, northeastern state. The complaint made by the hospital staff said that about 10 employees were contaminated by alleged leakage of a chemical used to make dental x-ray. Some employees are hospitalized in Curuçá and others were taken to Bethlehem for treatment.

 

Since last week the SESPA became aware of the case and is investigating the complaint on two lines of research. One is that the symptoms reported by employees can be caused by bacteria or a respiratory virus.

 

Laboratory technicians Central State (Lacen) and Epidemiological Surveillance investigating the case. The result of tests performed by teams due out today (Monday).

(Continue . . . )


 

 

Is this a `Zebra’?

 

We won’t know that until more information comes in. Most turn out to be less than earthshaking in their impact.  But every once in awhile . . .

 

The point is, these stories – whether they turn out to be something of global importance or not – are being monitored, organized, and posted every day by the newshounds of Flublogia – making a historical record available for anyone who wants to look.

 

 

I couldn’t do a lot of what I do in this blog without their capable assistance, and for that, they get my profound thanks and admiration.

 

 

_________________________________________________

The term `Zebra’ comes from the famous adage, retold to almost every beginning medical student, is that if you are in Central Park, and you hear hoof beats coming up behind you . . . think horses . . not zebras.

 

Simply put, doctors should always seek to rule out the most likely diagnoses first, not some obscure and exotic disease.

 

The caveat being that every once in awhile you run into a zebra.

Thursday, October 06, 2011

The View From Flublogia

 


# 5883

 

Author and filmmaker Peter Christian Hall (see  A Recurrent Fever) - in the wake of the release of the movie `Contagion’ - recently interviewed a number of flu bloggers, and his story is published today on The Huffington Post website.

 

Follow the link below to read it.

 

Contagion Grips 'Flublogia'

Posted: 10/6/11 03:24 PM ET

Thursday, September 30, 2010

Thursday Morning Roundup

 

# 4950

 

 

After a rainy drive across the state I arrived at St. Augustine late yesterday afternoon.  T.S. Nicole died over Cuba, and the weather has cleared remarkably.

 

Since this is a bit of a working holiday for me, I’ll keep these entries brief until I return.  This morning, some links to stories and events around Flublogia.

 

Ida at BFIC has 3 reports overnight on the continued spread of H5N1 in poultry in South Sulawesi and new outbreaks in West Sulawesi.

 

West Sulawesi ::: Bird flu uprises in 2010

Posted by Ida on September 30, 2010

Mamuju – Avian influenza or bird flu H5N1 prevalence in West Sulawesi province is uprising in September 2010.

Balikpapan, East Kalimantan ::: Chickens death confirmed bird flu

Posted by Ida on September 30, 2010

Balikpapan – The cause of chickens’ death in Kelurahan Manggar, Balikpapan Timur, East Kalimantan province is identified of bird flu H5N1 virus. Diagnosis was done through rapid test by of Agriculture, Marine and Fishery Service. Samples have been sent to Banjar Baru, South Kalimantan for confirmation.

Polman, West Sulawesi ::: Bird flu has spread to Kabupaten Polman

Posted by Ida on September 30, 2010

Polewali Mandar – After hitting three municipals (kabupaten) in South Sulawesi province – Pinrang, Sidrap and Luwu -  bird flu H5N1 is now attacking thousands of chicken in Kecamatan Limboro and Binuang, Kabupaten Polewali Mandar (Polman), West Sulawesi.

 

 

Arkanoid Legent has the latest Australian & New Zealand influenza surveillance data, along with reports on Dengue in Pakistan and the Philippines.

 

 

Australian Influenza Surveillance 2010 - Latest report

The latest report from the Department of Health and Ageing in Australia, excerpt :
Report No. 37
Reporting period 11 to 17 September 2010

  • Levels of influenza-like illness (ILI) in the community have continued to increase through most surveillance systems this reporting period. Local, regional and widespread activity was reported within jurisdictions. However, the number of laboratory confirmed notifications continued to decline.

New Zealand : Pandemic Influenza H1N1 2009 (swine flu) - Update 210

The latest H1N1 update from New Zealand's MOH :
" Overall influenza H1N1 activity continues to decrease below baseline levels. While some cases and clusters of influenza are likely to continue, this is much less frequent now and at a national level we are nearing the end of the second wave of pandemic influenza H1N1 in New Zealand. The Ministry's weekly updates will end next week.

 

Crof has reports on  Underreported Dengue in Pakistan, the unintended consequences of mosquito control in Sri Lanka: Killing our enemy's enemy, and a somewhat breathless report out of Sydney Australia: A world without antibiotics.

 

The `big story’ this week continues to be the hospitalization and isolation of several residents of Pinrang, Indonesia who are experiencing flu-like symptoms after exposure to dead or dying chickens.

]

Thus far, we have no announced laboratory results, and so it is unknown whether any of these people are infected with the bird flu virus. 

 

The numbers appear to shift a bit depending upon the news source, but it appears that 26+ people are being monitored in their homes, and 4 or 5 are hospitalized.  

 

FluTrackers is maintaining a forum thread with updated reports that you can check here.

 

The most recent report comes from Treyfish, and is a translation of a  Para Pos article called  5 Warga Suspect Flu Burung, excerpts of which appear below.

 

Thursday, September 30, 2010
3 Referred to Makassar, 2 Isolated


5 Residents Suspect Bird Flu
THURSDAY, 30 SEPTEMBER 2010


PINRANG - Five residents in District Lanrisang Pinrang otherwise suspect (suspect) bird flu. Three out of five residents, each Nawir (42), Andrews (5) citizens Suppang Saddang Hamlet, and Novi (18) Same Ulue Village on Tuesday night, was referred to the Provincial General Hospital Dr M Wahidin Sudirohusodo.

 

<SNIP>

 

Not less than 26 residents who currently monitoring the Health Department. "These data may increase, but we hope diminished," she said. Rusman explained, which distinguishes the common cold sick with bird flu is body temperature. However, if positive for bird flu, 80 percent of patients will experience death.

 

Authorities say it will take roughly 10 days before test results will be known due to the repeat testing that they require to confirm or rule out the disease.

 

FluTrackers also has reports on msny of other disease outbreaks around the world, medical studies recently published, and other humanitarian crises.

 

You could spend a year there, and not read it all.

 

I’ll check back later in the day to survey the scene, but as you can see, these newshounds and bloggers have everything in Flublogia well covered.

Friday, June 04, 2010

Referral: Crof On Flublogia’s Future

 


# 4621

 

 

Last night Crof over at Crofsblog posted an essay entitled Flublogia after the Pandemic, where he takes a hard look at the failures of North American media outlets to cover important international stories and our societal ignorance over issues like the spread of Dengue,  Malaria, and the rise of other emerging infectious diseases around the world.

 

He’s right of course.  

 

If it doesn’t happen on our shores, or threatens to affect us directly, it isn’t worthy of the 6 o'clock news.

 

Flublogia, particularly the newshounds on flu forums like Flu Wiki and FluTrackers, have devoted a good deal of time and effort tracking these stories, of course.  But their audience is limited, and their members have a keen interest in emerging infectious diseases.

 

For the most part, North Americans remain oblivious to public health concerns outside of our hemisphere.

 

With flu news (at least temporarily) on the decline, Crof has been working to diversify his site to offer more coverage of other diseases like malaria and dengue.   He’s done a terrific job, particularly on his translations of south and central American news stories.

 

Even as Flublogia contracts – such as with the recent shuttering of Effect Measure  -  Crof envisions a new direction for flu bloggers.  

 

Read:

 

Flublogia after the pandemic

Sunday, May 16, 2010

Effect Measure’s Farewell Blog

 

 

# 4572

 

 

 

Earlier today I was alerted that the Revere’s at Effect Measure, after more than five years and more than 3500 blogs, would be `closing up shop’.

 

Nothing lasts forever, of course.  But that doesn’t remove the palpable tinge of sadness that comes with this news.

 

Five plus years is a long run on the Internet, particularly given the number of in-depth blogs that have graced the two incarnations of Effect Measure.   It takes a lot of work – and a lot of your life – to keep a serious blog going day-in and day-out over the years.

 


The Reveres will apparently continue to contribute from time to time to The Pump Handle, and so they really aren’t going away.   

 

But we shall miss them just the same.

 

They’ve been very kind to this blogger over the years, and much of what I’ve learned about the science behind influenza was derived from their writings.  They leave behind a veritable treasure trove of good science information.

 

I’m very grateful to them  on a multitude of levels.

 

There will be more details in the week to come, but here is the farewell message from the Reveres.

 

We bid you farewell

Category: BlogPersonal

It's been a long time coming but the time has come. Effect Measure is closing up shop, after 5 and a half years, 3 million visits and 5.1 million page views of some 3500. You commented on them some 37,000 times. It's been a grand ride but to all things there is a season. It's time to simplify my life and while my family has had me all along, at times science got short shrift. Now my time is getting short and I want to turn my attention to my research, the other polar star of my life. "Revere" will continue to post occasionally on Effect Measure's successor site, The Pump Handle (TPH), which will hold down the public health anchor position after EM is gone. We'll provide more details later this week when we officially hand off this spot to our friends and colleagues at TPH. Our archive will be folded into theirs, with details to follow when they are firmed up.

(Continue . . . )

Sunday, February 28, 2010

Roundup Of Flublogia

 

 

# 4391

 

 

It’s been several weeks since my last recap of stories from in and around Flublogia (along with other science blogs), so this quiet Sunday morning seems an ideal time to catch up.

 

As always, this is a subjective list of things that I found of interest, and by no means mentions every worthy blog post out there.

 

With influenza on the decline in North America and around the world, much of the focus of Flublogia has shifted away from `breaking news’ to a review of what we’ve learned, or are learning, from this pandemic.

 

You’ll also find a rise in coverage of other EIDs (Emerging Infectious Diseases).

 

My apologies for the good stories I may miss.  So, with that said, in no particularly order . . .

 

 

CIDRAP has a long history of providing in depth coverage of EIDs and other pathogenic threats.   Their frequently updated Novel H1N1 Influenza (Swine Flu) overview is a resource I use on a regular basis.

 

CIDRAP News coverage is second to none, with terrific reporting by editor Robert Roos, staff writer Lisa Schnirring, and contributing writer Maryn McKenna.  

 

A few recent examples include:

 

Hong Kong reports swine-pandemic flu reassortant 

Emergency departments see rise in flu-like illness

Study yields highly pathogenic avian, human flu virus mix

Updated review questions benefits of flu vaccine in elderly

 

If CIDRAP News isn’t among your daily internet stops (they update weekdays - usually late afternoon/early evening EST), it should be.

 

While H1N1 may be declining, H5N1 bird flu reports have been on the rise, with both human and poultry infections reported in places like Indonesia, Vietnam, and Egypt.  

 

Often, we get our first glimpse of these cases from the flu forum newshounds who work diligently each and every day, combing through foreign language media for these sorts of reports. 

 

This is exacting (and sometimes exhausting) work, and it requires both dedication and skill.   You’ll find a tribute to these volunteers in my essay: Newshounds: They Cover The Pandemic Front.

 

I won’t attempt to name them all, but the four whose names seem to be showing up the most in this blog over the past few weeks are; Ironorehopper, Dutchy, Ida at BFIC, and Commonground of Pandemic Information News.

 

My thanks to them, and to all of the other newshounds.

 

Sharon Sanders, editor of FluTrackers conducted another in her series of high profile radio interviews last week, this time with Gregory Härtl, spokesperson for the World Health Organization.  

 

If you missed the broadcast, the show is archived here.

 

My buddy Scott McPherson doesn’t blog as often as most of us would like, but when he does it is invariably an informative, and always entertaining, read.   You’ll find three new blogs this month on his website.

 

The countdown to the release of Maryn McKenna’s new book  SUPERBUG: The Fatal Menace of MRSA continues, with the big day just over 3 weeks away

 

Meanwhile, Maryn continues to update us on emerging antibiotic resistant pathogens via her Superbug blog, with several stories that showcased the reports from CBS Evening News with Katie Couric on the use of antibiotics on the farm.

 

CBS antibiotics and farming package, day one
CBS antibiotics and farming, day 2 - and more on the Danish experience
Antibiotics and farming — CBS follow-up video

 

Revere at Effect Measure is drowning writing a grant proposal, but still manages to come up for air on occasion.  Recently Revere looked at the issue of pre-existing conditions and pandemic influenza in Bad flu and underlying medical conditions.

 

Crof over at Crofsblog, is using his Spanish language skills to track emerging infectious diseases in Central and South America, along with his usual terrific coverage of influenza.  You’ll find some of the best coverage of Dengue, Malaria, and other diseases on his blog.

 

Ian York on his Mystery Rays blog continues to fascinate with his historical look back at disease outbreaks of the past, including his recent look at yellow fever (The deadliest, most awe-inspiring of the Plagues ).

 

Prior to that Ian looked at the complex issues of virulence and transmission in an intriguing look at Rabbits, virulence, history, and connections .

 

On the flu front, York `did the math’ and came up with a reasonable approximation on the level of herd immunity we likely have in the United States to novel H1N1 in How many Americans are immune to H1N1?

 

Paul over at Chen Qi continues to publish – in newspaper format – a terrific daily roundup of disease and disaster news. 

 

Vincent Racaniello at the Virology Blog continues with his series of college virology lectures (#10 is now posted), along with his TWiV and TWiP podcasts.  

 

And of course, the flu forums (I visit Flu Wiki and FluTrackers on a daily basis) continue to provide a font of information.

 

 

A sampling of some of my own offerings would include:

 

Influenza B Rising
Assessing A New Antiviral
PNAS: H3N2 And H5N1 Reassortment
Norovirus: The Gift That Keeps On Giving
An H1N1 Seroprevalence Study
TCAD: A Triple Play Combination
H9N2: The Other Bird Flu Threat

 

 

Hopefully this roundup will point you towards an article, or perhaps a resource, you may have missed in the past.

Sunday, February 07, 2010

Weekly Roundup Of Flublogia

 

 

# 4330

 

 

Once again I’m back with a recap of some of the stories from in and around Flublogia (and or science blogs) from the past couple of weeks.

 

This is a subjective list of things that I found of interest, and by no means mentions every worthy blog post out there.  It is more of a sampling, and not always restricted to flu.

 

My apologies for the good stories I may miss.  So, with that said, in no particularly order . . .

 

 

This weekend marks the fourth anniversary of the opening of the FluTrackers forum, and so congratulations are in order to Sharon Sanders, Sally, Jeremy - and to the dozens of moderators and advisors who help keep the wheels on the track - and of course to all of the members.    

 

FluTrackers, despite its name, follows more than just influenza.  It has become an enormous online repository of information on all manner of emerging infectious diseases, and is one I avail myself of often.

 

 

Although Revere at Effect Measure has been occupied with writing a major grant proposal, he has managed to find time to take Wolfgang Wodarg to the woodshed over his allegations against the World Health Organization and has offered up an assessment of the  CDC’s epidemiology efforts over the past year.

 

Fire in the hole: Wolfgang Wodarg and WHO

Random thoughts on CDC's swine flu effort: epidemiology and surveillance

 

Maryn McKenna’s Superbug Blog was named a top 50 Health Blog (and deservedly so) by he website The Science of Health, sharing honors with other deserving recipients including Effect Measure and The Pump Handle.

 

Her latest entry concerns budget cuts that will reduce or eliminate critical MRSA surveillance projects:

Bad news in the President's budget request


Three other entries of note include:

 

Recommending: Consumer Reports on hospital infections

Back again to MRSA in animals, and spreading to humans

Once again, flu and bacterial co-infection

 

 

Vincent Racaniello’s Virology Blog continues to provide us with videos of his Columbia University Virology Lectures (up to #5 now), along with access to TWiV his (This week In Virology) and TWiP (This week in Parasitism) podcasts. 

 

Professor Ian York’s  Mystery Rays from Outer Space blog is an eclectic collection of short science essays, and often takes me in unexpected directions.  Three diverse examples from the past ten days include:

 

Tumors as ecosystems

Virus discovery by jigsaw puzzle

Viral resistance and new functions

 

Crof over at Crofsblog has been doing some housekeeping and rearranging of his site, along with first class news gathering.  He also offered his evaluation of a recent contrarian editorial in Annals of viral paranoia VI: Fumento on WHO's real motives.

 

Newshounds on the flu forums (I frequent the Flu Wiki and FluTrackers) have been dealing with fresh reports of bird flu cropping up in Indonesia, Cambodia, India, Bangladesh, Malaysia and Egypt, along with the latest development with pandemic H1N1, and other emerging infectious diseases.  

 

As I’ve stated many times, this blog is highly dependent upon their hard work, and I try to highlight them whenever possible. 

 

Three that have been kept particularly busy over the past couple of weeks have been Ida at BFIC, Commonground at Pandemic Information News, and Paul at Chen Qi.  My thanks go to them, and the rest of the newshounds that are doing the heavy lifting of finding and translating news stories.

 

 

Some of my efforts over the past couple of weeks include:

 

At The Sound Of The Tone
Neurologic Manifestations of Pandemic (H1N1) 2009 Virus Infection
IgG2 and Flu
Indonesia: Changes In The H5N1 Virus
I Only Have Eyes For Flu
Contrarians At The Gate

 

Hopefully you’ll find something in this roundup you missed the first time round.