Showing posts with label Roundup. Show all posts
Showing posts with label Roundup. Show all posts

Thursday, November 27, 2014

Bird Flu Reports From India, Japan, Korea & Taiwan

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Credit UK Defra

 

# 9380

 

Between 2004 and 2007 the H5N1 avian flu virus expanded its range, going from basically being a problem for a handful of Southeast Asian countries, to being a problem for much of Europe, Asia, and the Middle East.  We saw huge wild bird die offs in China, Indonesia, and Eastern Europe, along with thousands of poultry infestations and culling operations.  

 

Along the way, several hundred humans were infected as well.

 

In 2008, H5N1’s expansion seemed to halt, and in many places the virus actually receded, leaving behind about a dozen places around the world where the virus remained entrenched.  Among them were Indonesia, Vietnam, Egypt, Cambodia, India,  Pakistan, Bangladesh, and China.

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Even in these countries, the number of outbreaks reported – and the number of human infections – dropped markedly, with the peak reached in 2006 (n=115) and steadily dropping since then (2013= 39 cases).   The foci of infections also shifted away from Vietnam and Indonesia towards Egypt and Cambodia.


While never quite going away, it seemed as if the avian flu threat was simply fading away.

 

That is, until a new avian flu virus – H7N9 – appeared abruptly in China in the spring of 2013 sparking two consecutive winter epidemics, and is expected to return again this winter as well.  In quick succession, several more avian flu viruses appeared – including H5N8 in Korea (now spread to Europe & Japan), H5N6 in China and Vietnam, H5N3 in China, and H10N8 in China.

 

Now, instead of one avian flu threat, we have anywhere from three to six to keep track of (H5N1, H7N9, H5N8, H5N6, H5N3, H10N8), and no one should be terribly surprised if several more novel reassortants emerge over the next couple of years. 

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Reassortant viruses emerge when two different flu viruses share a common host and swap genetic components. Most reassortant viruses are evolutionary failures, but every once in awhile a more `fit’ virus emerges.

Not only are there more `building blocks’ in play, for flu viruses to swap and play with, the poultry vaccines in use in China and elsewhere are losing their effectiveness, and that may be promoting the creation of new flu strains (see EID Journal: Subclinical HPAI In Vaccinated Poultry – China).

 

In recent weeks we’ve seen more bird flu stories, from more diverse locations, than we have in a number of years.  While this may be a flash in the pan, for now bird flu concerns are once more on the ascendant – albeit, for now, mostly for poultry operations. 

 

With so much going on in India, Korea, Japan, the Netherlands, Germany, the UK, and Egypt – instead of blogging separately about these news stories – I’ve put together a morning round up.


Our first stop: India, where over the past few days we’ve seen reports of massive duck die offs in Kerala, and government plans to cull 200,000 birds.  While initially only identified as an HPAI H5 virus, today multiple media sources are reporting the virus is the H5N1 subtype.

 

Kerala Confirms Bird Flu is Deadly and Highly Contagious Strain

Updated: November 27, 2014 15:56 IST

Kottayam: Kerala has confirmed that the outbreak of bird flu in the state is of the feared H5N1 strain, which is highly contagious and can be fatal to humans.

Government officials said that massive culling of birds is being done to prevent the spread of the disease.

The virus itself killed about 15,000 infected ducks in Kottayam and another 500 in nearby Alappuzha, the first cases of the disease in the country since February this year.

(Continue . . . )

 

Meanwhile, in Korea, there are fresh reports the the H5N8 virus – which emerged there last January and proceeded to devastate the poultry industry -  has been detected again on a poultry farm in the coastal city of Gyeongju in Gyeongsang Province.

 

Bird Flu Spreads in S. Korea

Pyongyang, November 26 (KCNA) -- A bird flu occurred at a chicken farm in Kyongju City, North Kyongsang Province, south Korea on Nov. 24, according to KBS of south Korea.

Hundreds of chickens were culled and buried.

It was also reported that bird flu caused by migratory birds is spreading.

(Continue . . .)

 

In Japan, another report of migratory bird feces testing positive for the H5N8 virus, this time in Tottori.

This season highly pathogenic avian influenza detected in Tottori third example

November 27, 2014

Ministry of the Environment is the 27th, highly pathogenic avian influenza virus from droppings of ducks found in Tottori (H5N8 subtype) was detected, was announced. Domestic wild birds in the highly pathogenic avian influenza has been confirmed Shimane Prefecture Yasugi, season three cases eyes continued to Chiba Prefecture Nagara.

(Continue . . .)

 

And from Taiwan this morning, reports (h/t Ronan Kelly of FluTrackers) of both H7N9 and H7N5 in migratory bird feces samples collected this month from Tainan City, in the southwest of Taiwan.  Further testing will be required to determine the pathogenicity of these subtypes.

 

Four grass wetlands and migratory birds excrement detection of H7N9 subtype avian influenza virus vaccination started around the poultry farms safe and secure

Published date: 2014/11/27 morning 10:55:20| last modification date: 2014/11/27 10:55:20

Four wetland today in this city (103) on November 15, feces sampling inspection in routine monitoring of migratory birds on 25th H7N5 and subtype H7N9 avian influenza viruses isolated, identified highly pathogenic virus does not at present, but homologous strains is a city, pending final confirmation.

Protection of animal epidemic prevention Department said in this city, as a safeguard against four grass migratory birds carrying the virus, around the 25th started 6 games within a 3 km radius of poultry farms quarantine measures, including 1 feeding chickens, health situation is good, same day sampling inspection. Animal Health Department has stepped up poultry farms in and around the public road disinfection and epidemic prevention work, and to strengthen the poultry farm visits and monitoring of the epidemic, and take precautions against the epidemic. According to the sampling frequency of the disposal process 1 times per month on poultry farms within 3 kilometers to strengthen monitoring for 3 months after confirming that the avian influenza virus activity was not detected, you can unlock the wetlands regional monitoring measures.

(Continue . . .)

 

Meanwhile we continue to see scattered media reports of bird flu `alarm’ in Egypt, amid numerous poultry outbreaks and three recent human infections (see Meanwhile, Back In Egypt . . . .), and Europe continues to ratchet up their biosecurity measures against any further introductions of the H5N8 virus (see Defra updated bird flu guidance).


While the public health threat fairly remains low from these viruses, the one constant with influenza viruses is their capacity for change.  So we watch these outbreaks carefully, for any signs that these viruses may be evolving into a greater human health threat.

Thursday, April 24, 2014

Morning MERS Roundup – 4/24/14

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Coronavirus – Credit CDC PHIL

 

 

# 8520

 

Although we don’t actually know much more about what is going on with the MERS virus than we did a few weeks ago, the sudden spike in cases being reported in Saudi Arabia and the UAE has raised international concerns that the virus may be evolving.

 

We won’t know if that’s true – or if there is some other explanation behind this jump in cases (ie. seasonality, super spreaders, breakdown in infection control, etc.) – until fresh sequences are generated and analyzed and some good old-fashioned gumshoe epidemiology can be completed.

 

In the meantime we are seeing a good deal of media attention focused on, and some serious analysis being given to, the evolving situation.  To get you started this morning, below you’ll find a short list of items published over the past 12 hours from sources and experts I trust.

 

 CIDRAP NEWS (2 reports)

 Helen Branswell 

Dr. Ian Mackay 

 

 

Friday, February 22, 2013

A Friday News Round Up

 

 


# 6960

 

 

There has been a good deal of disease news this week, much of which I’ve been unable to get to. So to catch up, a brief roundup of reportage from around the web.

 

 

Crof has a report this morning that Another H5N1 patient dies in SW China , along with another story, Cambodia: More on the 7th H5N1 death.

 

You’ll also find on Crofsblog, an easy to follow Cambodia: H5N1 chronology to February 21.

 

 

From CIDRAP News, the tag team of Lisa Schnirring and Jim Wappes produced five stories yesterday, all well worth your attention:

 

CDC midseason check finds scant flu vaccine effect for seniors

Feds unveil new policies for 'dual-use' H5N1 research

WHO confirms 13th novel coronavirus case

WHO recommends new B strain for next season's flu vaccine

Cambodia reports another H5N1 death

 

The always terrific Maggie Fox wrote about the latest CDC estimate of flu vaccine effectiveness for NBC News.

 

CDC says flu vaccine barely worked in over-65s this year

 

As did the inimitable Helen Branswell of the Canadian Press.

 

 

Flu shot gave minimal help to seniors

February 22, 2013 - 4:15am By HELEN BRANSWELL The Canadian Press

 

 

And lastly, I’d be remiss if I didn’t give a hat tip to the hardworking newshounds on FluTrackers and the FLu Wiki, whose tireless efforts not only help me in my blogging endeavors, but also provide an ongoing chronicle of emerging disease events around the globe.

Friday, February 25, 2011

A Friday Round Up Of Bird Flu Reports

 

 

# 5338

 

 

My opinion of (mostly machine-translated) foreign media reports on disease outbreaks is essentially the same as what I’ve held about American television programs over the years;

 

I’m not particularly thrilled by their quality, but I tend to watch them all the same.

 

Disease surveillance and reporting – particularly in places like Indonesia and China – tend to be less than optimal, and so media outlets are usually our first (and sometimes only) source of outbreak information.

 

Unfortunately translations can produce vague, ambiguous, or sometimes misleading results.  Other times stories are simply wrong, or blown out of proportion.

 

So I tend to approach all reports – even official ones – with a fair amount of skepticism.

 

But, as I say, I do watch them.  And on occasion I highlight them here in this blog. 

 

This week we are seeing poultry & wild bird outbreaks of bird flu in a host of countries, and in at least two (Indonesia & Cambodia), a number of potentially exposed people are said to be `under observation’.  


It isn’t at all clear that any of these `suspect’ cases actually have the H5N1 virus.

 

So, with the appropriate caveats out of the way, a round up of a few H5N1 reports from around the globe.

 

Indonesia


On Monday, Ida at BFIC reported on a die-off of poultry in Garut, Indonesia and Dutchy started a thread Flutrackers which you can follow HERE.

 

In quick succession we saw stories posted by other newshounds indicating that the Indonesian government was sending more Tamiflu into the region, and that poultry deaths had been reported in 5 local villages over the previous 3 weeks, and that villagers were resisting government attempts to cull their flocks.

 

On Monday it was reported that 5 citizens with contact with infected poultry were under observation for `flu-like’ symptoms.  

 

By Tuesday, that number had increased to 14.  A typical report, posted by Treyfish, reads:

 

H5N1 raged in Garut, 600 Chicken Dead, 14 Citizens Influenza

 
By admin-February 22, 2011

At least 600 chickens died suddenly due to mengganasnya Avian Influenza (AI/H5N1), Sukaratu Village, and Village Banyuresmi Sukasari Banyuresmi Garut district, even up to now there are about 14 local residents suffering from severe influenza.

(Continue . . . )

 

 

By Thursday, the headlines became a bit more concerning, although the large number of people under `observation’ appear to be so out of an abundance of caution.

 

This report was posted by Dutchy123 on FluTrackers.

 

163 Garut residents feared H5N1 Transmission


Thursday, February 24, 2011,


Officers destroy bird flu infected poultry


REPUBLIKA.CO.ID, GARUT - Public Health Service, Garut regency, West Java, to supervise the 163 people who live in District Banyuresmi, because it was feared H5N1 virus or bird flu after the discovery of hundreds of chickens died suddenly fell ill from the virus.

 

Head of Communicable Diseases Eradication (P2M), Public Health Service, Garut regency, Dede Rohmansyah told reporters on Thursday, said the monitoring of citizens because otherwise have been in contact with dead or sick poultry.

(Continue . . . )

 

 

It isn’t all all clear that any of these people under observation are genuinely suspected of having the virus. Today, however, we are seeing a report about at least one suspected human infection.

 

This, again, from Treyfish on FluTrackers.

 

Animal Husbandry Department Officers Suspected Bird Flu Virus Infected


Friday, February 25, 2011 | 16:16 pm
TEMPO Interactive, Garut - Head of Technical Services Unit Banyuresmi District Livestock Office, Garut regency, West Java, the initials EK, 49 years suspected of contracting the H5N1 virus or bird flu from poultry. "His condition began to improve, but still suspect bird flu," said Executive Responsible Garut Hospital Isolation Room, Asep Roni Aryanto, Friday (25 / 2).

 

Residents Cempaka Perum Bumi Indah, Lebak Jaya Village, District Karangpawitan, have not been allowed to go home. The hospital is still in intensive care in isolation rooms. EK admitted to hospital on Friday afternoon at around 12.00 pm.

(Continue . . . )

 

For now, all we really have is a large outbreak of poultry deaths due to the H5N1 virus, a number of local villagers with `flu-like’ symptoms, and a lot of Tamiflu being passed out as a  precaution.

 

Events that, quite frankly, we’ve seen before in Indonesia. But the newshounds will keep close watch on the situation, and I’ll post an update if more comes of it.

 

 

Vietnam

 

From Xinhua News, we learn that five new provinces in Vietnam are reporting outbreaks of H5N1. 

 

Vietnam reports more cases of bird flu

HANOI, Feb. 25 (Xinhua) -- Bird flu has been discovered in five more provinces in Vietnam, the Vietnam News Agency reported Friday.

 

According to the report, the cases were found in northern Thai Nguyen, Vinh Phuc, Lang Son, Nam Dinh provinces and Central Highland Kon Tum province.

 

Meanwhile, foot-and-mouth disease has been discovered in 19 provinces across the nation since the end of January. A total of about 700 buffaloes, cows and pigs were reported to be affected.

 


South Korea

 

The last OIE report, submitted on February 18th, listed 48 separate outbreaks since December.  This, again from Xinhua News. 

 

 

S Korea confirms additional case of bird flu

SEOUL, Feb. 25 (Xinhua) -- South Korea on Friday confirmed an additional case of bird flu at a farm near Seoul.

 

The Ministry for Food, Agriculture, Forestry and Fisheries said the new case of the H5N1 virus was confirmed at the chicken farm in Yeoju, about 100 kilometers southeast of Seoul.

 

About 30,000 chickens on the farm have been culled to prevent the spread of the disease, the ministry said.

 

The spread of the disease has shown signs of slowing down in February with only five confirmed cases, including the latest one.

 

A record 5.5 million birds have been put to death due to the disease, which began in December last year.

 


Bangladesh



While not necessarily making big headlines, Bangladesh continues to struggle with large numbers of H5N1 outbreaks in poultry.  In an OIE Report submitted on Feb 24th, they list 22 new outbreaks so far in February.

 

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Follow up Report #29

 

India

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Mizoram India is nestled between Bangladesh, Tripura, and Myanmar; nearly surrounded by bird flu endemic regions.  As this New Kerala article tells us - the alert is on to prevent the introduction of H5N1 into their region.

 

Tripura, Mizoram on bird flu alert

Aizawl/Agartala, Feb 25 : Mizoram Friday sounded a bird flu alert following the outbreak of the avian influenza in neighbouring Tripura and also in Myanmar and Bangladesh, which border the state.

The authorities in Tripura, after the fresh cases of bird flu, have culled more than 6,000 ducks and poultry birds and are now busy with mopping, cleaning and disinfecting.

(Continue . . . )

 

 

And to the above stories we could easily add ongoing reports out of Egypt, Cambodia, and Japan.

 

 

While none of these outbreaks appear unusual or particularly alarming, they do serve to remind us that the bird flu threat has not abated.  The virus continues to circulate in wild & migratory birds, and poultry flocks, across large areas of the globe.

 

Despite the obvious concerns over human exposure to bird flu, the H5N1 virus remains primarily adapted to avian physiology. Humans have only rarely contracted the virus, usually after direct exposure to infected birds.

Friday, February 18, 2011

A Roundup Of Recent Bird Flu Reports

 

 

# 5322

 

 

This blog doesn’t attempt to list every H5N1 bird flu outbreak that crosses the wires, since those stories are already well covered by terrific bloggers and newshounds at Crofsblog, Arkanoid Legent, Chen Qi, the Flu Wiki, FluTrackers and others.

 

 

H5N1 outbreaks are ongoing among poultry and wild birds in a number of countries right now, including Egypt, Indonesia, Japan, Korea, Bangladesh, Vietnam and Cambodia.     

 

But when activity increases or is somehow unusual in nature, or jumps to regions where it is less common, or involves suspected human cases, I try to provide some coverage.

 

Yesterday, after an absence of new outbreaks for nearly a year, India reported a reoccurrence of H5N1 to the OIE at a state duck & poultry farm in Tripura.

 

 

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Map credit- OIE.

 

 

The epidemiological notes on the OIE Report states:

 

Epidemiological investigation is ongoing. Stamping out of all domestic birds is being applied in an approximately 3-km-radius zone around the outbreak followed by compensation of the owners.

 

An intensive surveillance campaign has been launched in a 10-km-radius zone including:


- Closure of poultry markets and prohibition on sale and transportation of poultry products in the infected zone;
- Disinfection of premises after culling and sealing of premises where appropriate.


Restocking will be permitted in accordance with a protocol to be followed in this regard.

 

 

This report appears in the Indian Newspaper, The Hindu:

 

Birdflu in Tripura, culling begins

At least 3000 poultry, including chicken and ducks, were today culled in a State-owned poultry and within its three km radius here following outbreak of birdflu in Tripura.

 

State Animal Resource minister Aghor Debbarma told newsmen over two thousand chicken and ducks have died in the area since February 3 last and blood samples of some of them which were sent to Regional Animal Diseases Diagnostic Centre in Kolkata tested positive for H5N1 virus.

 

(Continue . . . )

 

 

 

Given the past history of outbreaks, and the porous border between India and hard hit Bangladesh, it isn’t particularly surprising to find the virus has returned.

 


Meanwhile, Vietnam has seen the re-emergence of the virus in a number of places this month, including Nam Dihn, Tom Hum, and Lang Son Province.

 

Overnight we learned via a pair of stories posted by Treyfish on FluTrackers that authorities are looking into a suspected H5N1 fatality in Thừa Thiên-Huế province.

 

image

 

From a machine translation of a story that appears in the VN Express, it is reported that a 15-year-old has died shortly after being transferred to the Hue Central Hospital for fever and respiratory problems.

 

While testing has not yet confirmed the presence of the H5N1 virus, 27 Healthcare workers and 4 patients who had contact with the teenager have been placed in quarantine and are receiving prophylactic antivirals.

 

Additionally, relatives and contacts of the victim are to receive Tamiflu.

 

 

Teenager suspected death from influenza A/H5N1

15-year-old patient in the mountainous district of Nam Dong, Thua Thien - Hue province, was taken to the family at the Medical University Hospital, Hue, then move the Hue Central Hospital and died there.

Through diagnosis, doctors Hospital of Hue Medical University identified patient (hospital day 14 / 2) with signs of influenza A/H5N1 infection with symptoms such as fever, dyspnea, pneumonia, failure acute respiratory. Health status is increasingly critical. The same day of admission, Hue University of Medicine decided to move patients to the Hue Central Hospital. However, only two half hours from when the referral, the patient died.

 

27 doctors, nurses, nurses and technicians of the University Hospital of Hue Medical and four patients share a room, contact with the sick, must be quarantined immediately and tamiflu medication within 10 days to prevent influenza A/H5N1 vaccine. On the same day, the University Hospital of Hue Medical and disinfection carried out the entire hospital.

 

Health Department of Thua Thien - Hue province has also sent its staff to the South East district conducted disinfection patient residence area, and isolation and to relatives of patients with preventive medication tamiflu.

 

 

And lastly, from Sumatra, Indonesia we get this report posted by Dutchy – again on FluTrackers – of a large outbreak of bird flu in poultry and a suspicious fever being reported by children in the region. 

 

Out of an abundance of caution, these children are being monitored by local health authorities. While Tamiflu has been dispensed (a standard precaution in these sorts of cases), no confirmatory test results have been received indicating that these children have the bird flu virus.

 

 

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Fever Attacks 16 Children


Thursday, February 17, 2011

KAYUAGUNG - The bird flu virus attacked the village of Old Srigeni, District Kayuagung, OIC. Hundreds of chickens and ducks died, ironically, this animal carcasses thrown into the River Komering by the citizens.


''We do not know what disease that makes chickens and ducks died,''said Kadesh Srigeni Old Mujahid.


This problem, already reported to the Animal Husbandry Department OIC. Officers had been taking samples chicken and sent to a laboratory (lab) in Flash Lampung. The result is ''a dead chicken of the residents are attacked due to bird flu,''he said.


<SNIP>


The result, as many as 16 children have a fever, hot and diarrhea. ''We have not find out whether they are exposed to the virus or not, that obviously they already we give the drug Tamiflu, bird flu antiviral drugs,''said Hakim.


He said there is one resident who develop shortness of breath. This incident “could not said outbreaks or unusual events, because there is no insulation our citizens and we continue monitor developments in the field by reducing medical personnel,''he said.

 

 

It should be noted that fevers and diarrhea are not uncommon symptoms, and may be due to a wide variety of causes.  Their proximity to a bird flu outbreak raises concerns, but often these cases turn out to be something far more mundane.

 

Despite the obvious concerns over human exposure to bird flu, the H5N1 virus remains primarily adapted to avian physiology. Humans have only rarely contracted the virus, usually after direct exposure to infected birds.

 

The concern, of course, is that over time the virus may adapt better to humans, and spark another pandemic.

 

So we remain at Pre-pandemic Phase III for H5N1 and and monitor reports such as these with considerable interest.

Friday, December 24, 2010

UK: Morning Roundup Of Flu Stories

 

 


# 5176

 

 

As stated before in this blog, the UK is in the grips of a not-entirely-unexpected, but nonetheless fairly serious outbreak of H1N1 influenza.

 

Between some truly nasty weather this December, and a low uptake of the influenza vaccine this year, there are concerns that the next few weeks will see a great many more cases of influenza-like illness across the UK.

 

Already hospitals and GPs are under a heavy workload, and the number of serious flu cases continues to rise.

 

Yesterday, it was announced that the National Influenza Hotline would be activated, and that the rules for prescribing Tamiflu were to be relaxed (see UK: Flu Triples In A Week, Puts NHS `Under Growing Strain’ – also look for an update from our UK GP, Chacal in the comments section).

 

 

This morning, we are hearing that the number of flu cases admitted to intensive care units has increased by 50% over the past 3 days, and that some surgeries may have to be postponed due to the flu outbreak.

 


A roundup, therefore, of some this morning’s media coverage of the UK’s flu outbreak (h/t to CopitoSP & Shiloh @ FluTrackers):

 

 

460 flu victims fighting for life as experts admit 24 deaths from swine strain may be only a fraction of the true number

By Sophie Borland
Last updated at 12:26 PM on 24th December 2010

 

 

 

Sharp rise in serious flu cases prompts jab questions

24 December 2010 Last updated at 07:38 ET

By Nick Triggle Health reporter, BBC News

 

 

Flu: intensive care cases 'double in a week' as cases accelerate

The number of people admitted to intensive care with confirmed or suspected cases of flu has doubled in a week, the government said on Friday.

By Andrew Hough, and Rebecca Smith 1:00PM GMT 24 Dec 2010

 

 

Some earlier blogs on this outbreak include:

 

Referral: Fergus Walsh On The UK Flu
The Pandemic Is Ended (But The Malady Lingers On)

Monday, October 04, 2010

A Roundup Of Indonesian Reports

 

Note: I’ve returned home to some desktop computer problems, and am relegated to using my netbook until I can sort them out.

 

 

# 4955

 

 Indo100410

 

 

 

Even after more than a week of media reports, it isn’t at all clear whether any of the more than 2 dozen people currently under medical observation from South Sulawesi, Indonesia are infected with the H5N1 virus.

 

What we know (from various media reports) is that in the wake of a large die off of poultry in the region from the H5N1 virus, over the last week 25-30 people have reported fevers and 4 or 5 appear to have been hospitalized (see Indonesia Still Simmering).

 

Laboratory tests have not been publically released, and it is certainly possible (perhaps even likely) that many of these `suspect’ cases have something far more benign than bird flu, like seasonal flu.

 

That said, we’ve another report this morning – this time of a high school student from East Kalimantan (not South Sulawesi) who has been isolated as a bird flu suspect. 


These next two items come from Ida at BFIC.

 

Balikpapan, East Kalimantan ::: A high-school student isolated as bird flu suspect

Posted by Ida on October 4, 2010

Balikpapan – A high-school student, with initial Ha (15 years old), from Gunung Bakaran Kelurahan Sepinggan Balikpapan Selatan, is being isolated at Karamunting room, Kanujoso Djatiwibowo hospital in Balikpapan, Sunday (3/10).

 

Ha was admitted to hospital because of developing high fever since Saturday (2/10). At the same moment, numbers of chicken reared in Ha’s house died with unknown cause.

(Continue . . . )

 

Late last week, BFIC also reported on a die off of chickens in this same region.

 

Balikpapan, East Kalimantan ::: Chickens death confirmed bird flu

Posted by Ida on September 30, 2010

Balikpapan – The cause of chickens’ death in Kelurahan Manggar, Balikpapan Timur, East Kalimantan province is identified of bird flu H5N1 virus. Diagnosis was done through rapid test by of Agriculture, Marine and Fishery Service. Samples have been sent to Banjar Baru, South Kalimantan for confirmation.

(Continue . . . )

 

 
While the full extend of the bird flu outbreak in South Sulawesi is difficult to gauge, this morning we have this report via Dutchy on FluTrackers that indicates more than 10,000 chickens have died so far.

 

MONDAY, 04 OCTOBER 2010 |


Already 10 111 Chicken Dead Bird Flu


PINRANG - Research Institute for Animal Health Big Maros claimed six of the 12 districts Pinrang positive was attacked by avian influenza (AI) is considered different from the facts on the ground. Until Sunday, October 3, bird flu has been found in eight districts.

(Continue. . . )

 

 

Indonesia, like Egypt and China (and several other countries), relies heavily on vaccines to control outbreaks of H5N1 in poultry despite calls to move away from that strategy.

 

From Antara News, we get this report on a lack of H5N1 vaccines in the Pacitan district of East Java, and the fears that it may leave them open to an H5N1 outbreak.

 

 

Pacitan district runs out of bird flu vaccine

Monday, October 4, 2010 14:45 WIB | National 

Pacitan, East Java (ANTARA News) - Pacitan district in East Java province has run out of bird flu vaccine needed to anticipation bird flu outbreaks.

 

"We have run out of bird flu vaccine because this year we only had 225,000 dosages whereas our total need is 2 million dosages per year," local head of department of animal health in food crops and livestock Fatkhurrozi said here on Monday.

 

 

Dr. C.A. Nidom, whose name has appeared often in this blog, was quoted last year in Poultry Indonesia as saying:

 

Poultry Indonesia Printing Edition, March 2009

(excerpts)

 

Chairul Anwar Nidom, a virologist with the Tropical Disease Centre at Airlangga University in Surabaya, said a common policy on bird flu was lacking among government agencies, making controlling the disease more difficult.

 

Nidom criticized the government’s policy of vaccinating poultry rather than culling, believing that it masks the virus, and ultimately contributes to its mutation.

 

 

In 2009 the OIE (World Organization For Animal Health) reaffirmed their long-standing position that vaccination of poultry cannot be considered a long-term solution to combating the avian flu virus.

 

In Avian influenza and vaccination: what is the scientific recommendation?, the OIE  reiterates their strong recommendation that humane culling be employed to control avian influenza, and advising that vaccines should only be used as a temporary measure.

 

One of the concerns is that vaccines – as they lose their effectiveness – could mask the symptoms of bird flu in poultry, but still allow the virus to spread. 

 

But for countries where poultry represents a large part of their food security, and where small holdings and backyard chickens are common, culling can be politically and economically a difficult policy to maintain.

 

Indonesia and Egypt appear to have the greatest incidence of bird flu outbreaks in the world today, but exactly how many outbreaks occur in places like China, North Korea, and some parts of Asia and Africa are unknown.

 

Sporadic human infections from the H5N1 virus continue to be reported in places where the virus is endemic and the World Health Organization continues to show us in a Pre-Pandemic Phase III watch for this virus.

 

 

image

 

While the virus has yet to adapt well enough to human hosts to transmit effectively between people, scientists still worry that the virus could mutate into a pandemic strain someday.

 

And so we continue to monitor outbreaks like the ones listed above.

Thursday, September 30, 2010

Thursday Morning Roundup

 

# 4950

 

 

After a rainy drive across the state I arrived at St. Augustine late yesterday afternoon.  T.S. Nicole died over Cuba, and the weather has cleared remarkably.

 

Since this is a bit of a working holiday for me, I’ll keep these entries brief until I return.  This morning, some links to stories and events around Flublogia.

 

Ida at BFIC has 3 reports overnight on the continued spread of H5N1 in poultry in South Sulawesi and new outbreaks in West Sulawesi.

 

West Sulawesi ::: Bird flu uprises in 2010

Posted by Ida on September 30, 2010

Mamuju – Avian influenza or bird flu H5N1 prevalence in West Sulawesi province is uprising in September 2010.

Balikpapan, East Kalimantan ::: Chickens death confirmed bird flu

Posted by Ida on September 30, 2010

Balikpapan – The cause of chickens’ death in Kelurahan Manggar, Balikpapan Timur, East Kalimantan province is identified of bird flu H5N1 virus. Diagnosis was done through rapid test by of Agriculture, Marine and Fishery Service. Samples have been sent to Banjar Baru, South Kalimantan for confirmation.

Polman, West Sulawesi ::: Bird flu has spread to Kabupaten Polman

Posted by Ida on September 30, 2010

Polewali Mandar – After hitting three municipals (kabupaten) in South Sulawesi province – Pinrang, Sidrap and Luwu -  bird flu H5N1 is now attacking thousands of chicken in Kecamatan Limboro and Binuang, Kabupaten Polewali Mandar (Polman), West Sulawesi.

 

 

Arkanoid Legent has the latest Australian & New Zealand influenza surveillance data, along with reports on Dengue in Pakistan and the Philippines.

 

 

Australian Influenza Surveillance 2010 - Latest report

The latest report from the Department of Health and Ageing in Australia, excerpt :
Report No. 37
Reporting period 11 to 17 September 2010

  • Levels of influenza-like illness (ILI) in the community have continued to increase through most surveillance systems this reporting period. Local, regional and widespread activity was reported within jurisdictions. However, the number of laboratory confirmed notifications continued to decline.

New Zealand : Pandemic Influenza H1N1 2009 (swine flu) - Update 210

The latest H1N1 update from New Zealand's MOH :
" Overall influenza H1N1 activity continues to decrease below baseline levels. While some cases and clusters of influenza are likely to continue, this is much less frequent now and at a national level we are nearing the end of the second wave of pandemic influenza H1N1 in New Zealand. The Ministry's weekly updates will end next week.

 

Crof has reports on  Underreported Dengue in Pakistan, the unintended consequences of mosquito control in Sri Lanka: Killing our enemy's enemy, and a somewhat breathless report out of Sydney Australia: A world without antibiotics.

 

The `big story’ this week continues to be the hospitalization and isolation of several residents of Pinrang, Indonesia who are experiencing flu-like symptoms after exposure to dead or dying chickens.

]

Thus far, we have no announced laboratory results, and so it is unknown whether any of these people are infected with the bird flu virus. 

 

The numbers appear to shift a bit depending upon the news source, but it appears that 26+ people are being monitored in their homes, and 4 or 5 are hospitalized.  

 

FluTrackers is maintaining a forum thread with updated reports that you can check here.

 

The most recent report comes from Treyfish, and is a translation of a  Para Pos article called  5 Warga Suspect Flu Burung, excerpts of which appear below.

 

Thursday, September 30, 2010
3 Referred to Makassar, 2 Isolated


5 Residents Suspect Bird Flu
THURSDAY, 30 SEPTEMBER 2010


PINRANG - Five residents in District Lanrisang Pinrang otherwise suspect (suspect) bird flu. Three out of five residents, each Nawir (42), Andrews (5) citizens Suppang Saddang Hamlet, and Novi (18) Same Ulue Village on Tuesday night, was referred to the Provincial General Hospital Dr M Wahidin Sudirohusodo.

 

<SNIP>

 

Not less than 26 residents who currently monitoring the Health Department. "These data may increase, but we hope diminished," she said. Rusman explained, which distinguishes the common cold sick with bird flu is body temperature. However, if positive for bird flu, 80 percent of patients will experience death.

 

Authorities say it will take roughly 10 days before test results will be known due to the repeat testing that they require to confirm or rule out the disease.

 

FluTrackers also has reports on msny of other disease outbreaks around the world, medical studies recently published, and other humanitarian crises.

 

You could spend a year there, and not read it all.

 

I’ll check back later in the day to survey the scene, but as you can see, these newshounds and bloggers have everything in Flublogia well covered.

Sunday, February 28, 2010

Roundup Of Flublogia

 

 

# 4391

 

 

It’s been several weeks since my last recap of stories from in and around Flublogia (along with other science blogs), so this quiet Sunday morning seems an ideal time to catch up.

 

As always, this is a subjective list of things that I found of interest, and by no means mentions every worthy blog post out there.

 

With influenza on the decline in North America and around the world, much of the focus of Flublogia has shifted away from `breaking news’ to a review of what we’ve learned, or are learning, from this pandemic.

 

You’ll also find a rise in coverage of other EIDs (Emerging Infectious Diseases).

 

My apologies for the good stories I may miss.  So, with that said, in no particularly order . . .

 

 

CIDRAP has a long history of providing in depth coverage of EIDs and other pathogenic threats.   Their frequently updated Novel H1N1 Influenza (Swine Flu) overview is a resource I use on a regular basis.

 

CIDRAP News coverage is second to none, with terrific reporting by editor Robert Roos, staff writer Lisa Schnirring, and contributing writer Maryn McKenna.  

 

A few recent examples include:

 

Hong Kong reports swine-pandemic flu reassortant 

Emergency departments see rise in flu-like illness

Study yields highly pathogenic avian, human flu virus mix

Updated review questions benefits of flu vaccine in elderly

 

If CIDRAP News isn’t among your daily internet stops (they update weekdays - usually late afternoon/early evening EST), it should be.

 

While H1N1 may be declining, H5N1 bird flu reports have been on the rise, with both human and poultry infections reported in places like Indonesia, Vietnam, and Egypt.  

 

Often, we get our first glimpse of these cases from the flu forum newshounds who work diligently each and every day, combing through foreign language media for these sorts of reports. 

 

This is exacting (and sometimes exhausting) work, and it requires both dedication and skill.   You’ll find a tribute to these volunteers in my essay: Newshounds: They Cover The Pandemic Front.

 

I won’t attempt to name them all, but the four whose names seem to be showing up the most in this blog over the past few weeks are; Ironorehopper, Dutchy, Ida at BFIC, and Commonground of Pandemic Information News.

 

My thanks to them, and to all of the other newshounds.

 

Sharon Sanders, editor of FluTrackers conducted another in her series of high profile radio interviews last week, this time with Gregory Härtl, spokesperson for the World Health Organization.  

 

If you missed the broadcast, the show is archived here.

 

My buddy Scott McPherson doesn’t blog as often as most of us would like, but when he does it is invariably an informative, and always entertaining, read.   You’ll find three new blogs this month on his website.

 

The countdown to the release of Maryn McKenna’s new book  SUPERBUG: The Fatal Menace of MRSA continues, with the big day just over 3 weeks away. 

 

Meanwhile, Maryn continues to update us on emerging antibiotic resistant pathogens via her Superbug blog, with several stories that showcased the reports from CBS Evening News with Katie Couric on the use of antibiotics on the farm.

 

CBS antibiotics and farming package, day one
CBS antibiotics and farming, day 2 - and more on the Danish experience
Antibiotics and farming — CBS follow-up video

 

Revere at Effect Measure is drowning writing a grant proposal, but still manages to come up for air on occasion.  Recently Revere looked at the issue of pre-existing conditions and pandemic influenza in Bad flu and underlying medical conditions.

 

Crof over at Crofsblog, is using his Spanish language skills to track emerging infectious diseases in Central and South America, along with his usual terrific coverage of influenza.  You’ll find some of the best coverage of Dengue, Malaria, and other diseases on his blog.

 

Ian York on his Mystery Rays blog continues to fascinate with his historical look back at disease outbreaks of the past, including his recent look at yellow fever (The deadliest, most awe-inspiring of the Plagues ).

 

Prior to that Ian looked at the complex issues of virulence and transmission in an intriguing look at Rabbits, virulence, history, and connections .

 

On the flu front, York `did the math’ and came up with a reasonable approximation on the level of herd immunity we likely have in the United States to novel H1N1 in How many Americans are immune to H1N1?

 

Paul over at Chen Qi continues to publish – in newspaper format – a terrific daily roundup of disease and disaster news. 

 

Vincent Racaniello at the Virology Blog continues with his series of college virology lectures (#10 is now posted), along with his TWiV and TWiP podcasts.  

 

And of course, the flu forums (I visit Flu Wiki and FluTrackers on a daily basis) continue to provide a font of information.

 

 

A sampling of some of my own offerings would include:

 

Influenza B Rising
Assessing A New Antiviral
PNAS: H3N2 And H5N1 Reassortment
Norovirus: The Gift That Keeps On Giving
An H1N1 Seroprevalence Study
TCAD: A Triple Play Combination
H9N2: The Other Bird Flu Threat

 

 

Hopefully this roundup will point you towards an article, or perhaps a resource, you may have missed in the past.

Sunday, February 07, 2010

Weekly Roundup Of Flublogia

 

 

# 4330

 

 

Once again I’m back with a recap of some of the stories from in and around Flublogia (and or science blogs) from the past couple of weeks.

 

This is a subjective list of things that I found of interest, and by no means mentions every worthy blog post out there.  It is more of a sampling, and not always restricted to flu.

 

My apologies for the good stories I may miss.  So, with that said, in no particularly order . . .

 

 

This weekend marks the fourth anniversary of the opening of the FluTrackers forum, and so congratulations are in order to Sharon Sanders, Sally, Jeremy - and to the dozens of moderators and advisors who help keep the wheels on the track - and of course to all of the members.    

 

FluTrackers, despite its name, follows more than just influenza.  It has become an enormous online repository of information on all manner of emerging infectious diseases, and is one I avail myself of often.

 

 

Although Revere at Effect Measure has been occupied with writing a major grant proposal, he has managed to find time to take Wolfgang Wodarg to the woodshed over his allegations against the World Health Organization and has offered up an assessment of the  CDC’s epidemiology efforts over the past year.

 

Fire in the hole: Wolfgang Wodarg and WHO

Random thoughts on CDC's swine flu effort: epidemiology and surveillance

 

Maryn McKenna’s Superbug Blog was named a top 50 Health Blog (and deservedly so) by he website The Science of Health, sharing honors with other deserving recipients including Effect Measure and The Pump Handle.

 

Her latest entry concerns budget cuts that will reduce or eliminate critical MRSA surveillance projects:

Bad news in the President's budget request


Three other entries of note include:

 

Recommending: Consumer Reports on hospital infections

Back again to MRSA in animals, and spreading to humans

Once again, flu and bacterial co-infection

 

 

Vincent Racaniello’s Virology Blog continues to provide us with videos of his Columbia University Virology Lectures (up to #5 now), along with access to TWiV his (This week In Virology) and TWiP (This week in Parasitism) podcasts. 

 

Professor Ian York’s  Mystery Rays from Outer Space blog is an eclectic collection of short science essays, and often takes me in unexpected directions.  Three diverse examples from the past ten days include:

 

Tumors as ecosystems

Virus discovery by jigsaw puzzle

Viral resistance and new functions

 

Crof over at Crofsblog has been doing some housekeeping and rearranging of his site, along with first class news gathering.  He also offered his evaluation of a recent contrarian editorial in Annals of viral paranoia VI: Fumento on WHO's real motives.

 

Newshounds on the flu forums (I frequent the Flu Wiki and FluTrackers) have been dealing with fresh reports of bird flu cropping up in Indonesia, Cambodia, India, Bangladesh, Malaysia and Egypt, along with the latest development with pandemic H1N1, and other emerging infectious diseases.  

 

As I’ve stated many times, this blog is highly dependent upon their hard work, and I try to highlight them whenever possible. 

 

Three that have been kept particularly busy over the past couple of weeks have been Ida at BFIC, Commonground at Pandemic Information News, and Paul at Chen Qi.  My thanks go to them, and the rest of the newshounds that are doing the heavy lifting of finding and translating news stories.

 

 

Some of my efforts over the past couple of weeks include:

 

At The Sound Of The Tone
Neurologic Manifestations of Pandemic (H1N1) 2009 Virus Infection
IgG2 and Flu
Indonesia: Changes In The H5N1 Virus
I Only Have Eyes For Flu
Contrarians At The Gate

 

Hopefully you’ll find something in this roundup you missed the first time round.

Monday, January 25, 2010

Weekly Roundup Of Flublogia

 

 

# 4286

 

 

Once again I’m back with a recap of some of the stories from in and around Flublogia (and or science blogs) from the past week (or so).

 

This is a subjective list of things that I found of interest, and by no means mentions every worthy blog post out there.  It is more of a sampling, and not always restricted to flu.

 

My apologies for the good stories I may miss.  So, with that said, in no particularly order . . .

 

We start this roundup with two pieces by Maryn McKenna on how MRSA is introduced and spread in a hospital environment.   The first appeared on CIDRAP (see New tool helps trace MRSA's local, global spread) and the second was a follow up blog post on Maryn’s Superbug Blog.

 

Maryn also shared with us a sneak peek at the cover art for her upcoming book on MRSA.   Congratulations, Maryn. 

 

Next up are two pieces by the Reveres at Effect Measure.

 

The first looks at attempts to define (and possibly control) the tools (at a cellular level)  that influenza viruses need in order to replicate.  In New tool to figure out what the flu virus does (and what it needs to do it), Revere looks at research that may lead someday to new types of antivirals.

 

In Another swine flu virus, the authors of Effect Measure look at the recent report that boy in Iowa recently (last September) contracted an H3N2 version of swine flu.   While no further spread has been detected, the Reveres remind us of why surveillance of these types of viruses is so important.

 

You can find my post on this story at H3N2 Swine Flu.

 

Although we’ve dozens of terrific newshounds working the Flu and Emerging Infectious Disease beat, I’d like to call your attention to two of them this morning, and their respective websites.

 

First is Ida at The Bird Flu Information Corner.

 

BFIC is a joint effort between Kobe University in Japan and the Institute of Tropical Disease, Airlangga University, Indonesia  and provides us with some of the best coverage and translations of Indonesian (Bahasan) news stories on the web.

 

 

Second is Commonground at Pandemic Information News.

 

Commonground is one of the most active of the flu forum newshounds, and posts at FluTrackers as well as on her own site.   She often finds and publishes foreign language stories out of Egypt, Vietnam, Indonesia (and other countries) days before the English language media picks up on them.

 

When you combine their work with that of dozens of others on flu forums (I follow the Flu Wiki and FluTrackers), you end up with a pretty effective news retrieval system. The time, patience, and expertise required to find, translate, and interpret these news stories in enormous.

 

My thanks and kudos go to all of the newshounds.

 

Another blog post that caught my eye this past week (I’m a sucker for disease history) was one from Professor Ian York at Mystery Rays from Outer Space.

 

In The good old days   York unveils some very old disease maps of the United States and the West Indies (circa 1856). 

 

image

 

While the reporting from CIDRAP news is always top-notch, a detailed examination of the Michigan Facemask/Hand Hygiene study by news Editor Robert Roos belongs near the top of my list of essential reading this week.

 

Masks plus hand hygiene reduced ILI in college dorm study

 


Of course, for the best daily news summary, I can think of no better stop than to visit Crof at Crofsblog.  And for news stories on a variety of infectious diseases, along with the latest out of Haiti, I’d direct you to Chen Qi.

 

 

A few of my own contributions this week to the Blogosphere include:

 

AFD’s Fourth Blogiversary
Study: H1N1 And Birds
Study: Effectiveness of NPIs Against ILI's
The MRSA Beat
Flu’s Double Whammy

 

 

Hopefully I’ve mentioned something you may have missed over the past week.

Monday, January 18, 2010

Weekly Roundup Of FluBlogia

 

 

# 4266

 

 

 

Once again I’m back with a recap of some of the stories from in and around Flublogia from the past week (or so).

 

This is a subjective list of things that I found of interest, and by no means mentions every worthy blog post out there.  It is more of a sampling.

 

My apologies for the good stories I may miss.  So, with that said, in no particularly order . . .

 

The big story, of course, is the horrendous impact of the earthquake in Haiti, which occurred on Tuesday.  The death toll is still unknown (and will likely never be accurately tallied), but will no doubt run in the tens of thousands.

 

So our first stop is the American Red Cross Disaster Newsroom, which carries updates on the relief effort going on in Haiti.  While you are there, you might consider making a donation.

 

image

 

You’ll also find updates, and ways you can donate to the relief efforts, as Save The Children  and CARE.org among others.

 

`Jimmy Jazz’, on the In Case of Emergency:Break Glass blog, has links to a number of important blogs and features on the earthquake.

 

Although technically not part of this week’s roundup, one of Jimmy’s articles from last year is especially timely, entitled Dead Bodies Do Not Cause Disease.   Revere at Effect Measure had a similar piece last year, as well.

 

Break Glass, by the way, has just celebrated its third Blogiversary.  Congratulations, Jimmy.   Blogs frequently come and go, but it is a real accomplishment to stay `on-the-air’ for 3 years running.

 

The indefatigable Crof at Crofsblog continues to produce the most comprehensive daily roundup of flu news on the net, and has added a number of reports on the Haitian disaster as well.

 

Next up, the return of Scott McPherson, who blogs exceedingly well, just not as often as his fans would like.   In Swine flu pandemic over? Far from over  Scott ponders what happens when this pandemic virus smolders in places l like rural China and India over the coming months.

 

Revere (well, one of them) continues their discussion on randomized trials verses observational studies at Effect Measure with:

 

Randomized trial versus observational study challenge, VI: randomization, first part

 [Previous installments: here, here, here, here, here]

One of the Reveres was also interviewed on Radio Sandy Springs by Sharon Sanders of FluTrackers last Monday.   It’s a terrific hour, even though there was audio trouble for the final couple of minutes.

01/11/10 Guest Revere of Effect Measure

Sharon Sander interviews one of the Reveres of the Effect Measure Blog

 

The week before, Sharon interviewed Professor Vincent Racaniello of the Virology Blog.  The link for that interview is:

 

01/04/10 Guest Vincent Racaniello, PhD

Sharon Sander interviews Vincent Racaniello, PhD


A couple of other flu related offerings from Effect Measure this week include:

 

Another swine flu virus

WHO prepares to don a hair shirt

 

Okay, it’s not flu related . . . but if you missed Potato salad, food poisoning and contortionists, you missed an incredible video of a little known variety act from the 1940s and a lesson in food poisoning.

 

 

If this sister act intrigues you, I wrote a bit more about them last March in my `other blog’  Master Of My Public Domain.

 

Hey, even flu bloggers can have eclectic interests.

 

 

CIDRAP News provides excellent coverage and analysis of H1N1 and other disease news, and while I can heartily recommend all of their reporting, a couple of features stood out for me this week.

 

Health officials, experts reject 'false pandemic' charges

WHO, vaccine group deny pandemic scare charges

 

Ida at the Bird Flu Information Corner – a joint effort between Kobe University in Japan and the Institute of Tropical Disease, Airlangga University, Indonesia – has been busy translating articles from the Indonesian Press on outbreaks of H5N1 in poultry, and some suspected (and confirmed) human infections.

 

As always, I am heavily reliant on the newshounds on the flu forums (I frequent Flu Wiki and FluTrackers) which continue to provide the best stream of raw news and information on emerging infectious diseases from around the world.

 

Given the events in California (a 6.5 earthquake off the coast) and in Haiti, several of my blogs have been about earthquake preparedness  . . . including one (see Shaken And (Hopefully) Stirred) that ran 3 days before the Haiti quake. 

Others include:

It Doesn’t Have To Be An Earthquake . . .
Inside My Bug Out Bag

 

 

And here at AFD you’ll find more than 25 entries since my last roundup.  Some you may be interested in checking out include:

 

The Migratory Bird Connection
H3N2 Swine Flu
CDC Updates Estimates Of Infections, Hospitalizations, and Deaths From H1N1
Swine Flu Sequelae

WHO To Review Their Pandemic Response